| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is wcaA [C]
Identifier: 170749889
GI number: 170749889
Start: 3707103
End: 3709010
Strand: Reverse
Name: wcaA [C]
Synonym: Mrad2831_3489
Alternate gene names: 170749889
Gene position: 3709010-3707103 (Counterclockwise)
Preceding gene: 170749890
Following gene: 170749888
Centisome position: 61.03
GC content: 74.53
Gene sequence:
>1908_bases GTGCTCCCGGATCATCCCGCCGGCTGGATCGTGCTGAGCTATGCCGGTGATCCGACGGCGGCGCCCCGGCGCCCGATCCT GCGCGTCCTGCGTGGGTCTGACGAGACCGTTCAGGACTTCGTCCTGCCGGGAGCCTCCCAGGGGCTCGCACACTGGCTCG GACTGATCCCCCCGGATGCGCGGGAGATCCGCCTCTCGGCCGGCGCCGATTTCGCCCTGGAGCGGGTCGGCGCCCGACGC GAGGTCGAGGTGCTCGCGCAGTGCCTCCTGCGCCGGCCCTGGCGCTGCGTCTCCGCCCTGTACGAGCGCGCCCGCGGGTC GGAGCGGCGCTACCGCGACATCCTGCGCGGCGCCTGCGCGGTGACGCCGATGGACCGGTTCCCGTCCTGGGCCGCCGCCC GGACCCGGCCCGCCCGCATCGCGCCCGCCGCCCTGCAGATCCGGTGCGTCCTGCTCGCGCAGCCCGGGGACGCGGCGGCG CTGTCGGTCACGCGGGACGCGCTGAACGCGCAGACGCACCGCCCCGAGTCGATCCGGGTCGCCTGGGCGGGGGCGCCGCC CGCGACGGCCAGCGGGCCGATGTCCCACCAGGCCTGGGACGAGGCTGCCCGCTTCGACGAGCTTTCCGGCGAGGCGGAGG CCCTGTGCCTGCTGCGCCCCGGCGACGTCCCGGAGCCGGAGGCCCTGGCGCTGCTCGCCCGCGCCCTGTCGGGCGCGGAC ATCGCCTACGGCGACGCGATCGATCCCGACGGCCGGCCGCGGCTGAAGCCGGACTGGAGCCCGGACCTTGCCCTGGCGAC GGGGTATCCGGGGTTTCCCCTCCTCCTGTCGAGAACCTGGCTCGCCGCGGCCCTGGCGCGCCCCGCCGGCCGGATGGCCG AGGTCGCGCCGGCCATCATGGCCGCCGCGATGACCAGCGCCGCGCGGGTGGCGCACGTCCCACGGATCCTCGCCCGCTCT GCCGGCGATGGCCTGAGCCCGTCCGCTCGGGCGGCGGCTTTCCACGCGCTCCGGGCCGGACGGCCTCAGGTCCGCGCCGG GATCCAAGACGGTGCCGTTCGCCTGGAATGGCCCCTGCCGGATCCGGTGCCGCTGGTCAGCATCGTGATCCCCTCGCGCG ACCGCCTCGACCTGATCACCCGCGTCTGCCGCGGGGTGCTCGCCGAGACCGCCTACGCGCCGCTCGAGCTGATCATCGTC GACAACGGCTCGACCGATCCGGCGGTCCTCGACCATTACGCGACCCTGCGCGGCGATCCGCGCGTCCAGATCCTCATGGA TCCGCAGCCCTTCAACTTCGCCGCGATGGTCAACGCCGGCGTCGCCGCGGCGTCGGGGACGATCGTCGTGCTGCTGAACA ACGACGTCGCCGTGCTGGAGCCCGGCTGGCTCGAGGCCATGGTCCGGCAGGCCTGCCGGCCGGAGGTCGGCGCCGTCGGG GCGAAGCTGCTCTACGGGGACGGTACCCTGCAGCATGCCGGCGTCGTCGTCGGTCTCGGTGGCCGAGCCGGGCACATCCT TCGTCGCCGGCCCGGCGACACGCCGGGTCAGCTCGGCCAGCTGCGCGTCGCGCACGAGGTCTCGGCGGTGACCGCCGCCT GCCTCGCCGTCGCGCGGGAGAAGTATCTGGCGGTGGGCGGATTCGACGCCGAGGCCTTCCCGGTGGATTTCAACGACGTG GATTTCTGCCTGCGCCTCGGCGCTGCCGGCTGGAAGACGGTCTGGACGCCGGCCGCGACGCTGGCCCATCTCGAATCCGT CAGCCGCGGTCCGTCCGTCGGGGCCAAGCGCGCCCGCTTCGAGCAGGAGGCCGCCCGCTTCTCCGAGCGCTGGCGCGCCG TGATCCGGCACGATCCGTTCTACCACCCCGCCCTGTCGGTCACGACCTTCGGCGAGGATCTGGAATGA
Upstream 100 bases:
>100_bases CCCGCTGATCGCGAAGACCGGTCGCGACAGGATCTGGCTCGGCCGGCCTGTCCGGTTTCGGCTGGAGGCCACGGACGATC CCGCGTTCGATCGCCGCCTC
Downstream 100 bases:
>100_bases CGCCGCCGGACGGCGCGTCGGGCCGCCGAGCGGCGCCGTTTCTCGGAGCGTCGCGCCGCTCCTGGCGCGCGCTGGTGGGC GCGGCGCGCCACGCGCTCGC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MLPDHPAGWIVLSYAGDPTAAPRRPILRVLRGSDETVQDFVLPGASQGLAHWLGLIPPDAREIRLSAGADFALERVGARR EVEVLAQCLLRRPWRCVSALYERARGSERRYRDILRGACAVTPMDRFPSWAAARTRPARIAPAALQIRCVLLAQPGDAAA LSVTRDALNAQTHRPESIRVAWAGAPPATASGPMSHQAWDEAARFDELSGEAEALCLLRPGDVPEPEALALLARALSGAD IAYGDAIDPDGRPRLKPDWSPDLALATGYPGFPLLLSRTWLAAALARPAGRMAEVAPAIMAAAMTSAARVAHVPRILARS AGDGLSPSARAAAFHALRAGRPQVRAGIQDGAVRLEWPLPDPVPLVSIVIPSRDRLDLITRVCRGVLAETAYAPLELIIV DNGSTDPAVLDHYATLRGDPRVQILMDPQPFNFAAMVNAGVAAASGTIVVLLNNDVAVLEPGWLEAMVRQACRPEVGAVG AKLLYGDGTLQHAGVVVGLGGRAGHILRRRPGDTPGQLGQLRVAHEVSAVTAACLAVAREKYLAVGGFDAEAFPVDFNDV DFCLRLGAAGWKTVWTPAATLAHLESVSRGPSVGAKRARFEQEAARFSERWRAVIRHDPFYHPALSVTTFGEDLE
Sequences:
>Translated_635_residues MLPDHPAGWIVLSYAGDPTAAPRRPILRVLRGSDETVQDFVLPGASQGLAHWLGLIPPDAREIRLSAGADFALERVGARR EVEVLAQCLLRRPWRCVSALYERARGSERRYRDILRGACAVTPMDRFPSWAAARTRPARIAPAALQIRCVLLAQPGDAAA LSVTRDALNAQTHRPESIRVAWAGAPPATASGPMSHQAWDEAARFDELSGEAEALCLLRPGDVPEPEALALLARALSGAD IAYGDAIDPDGRPRLKPDWSPDLALATGYPGFPLLLSRTWLAAALARPAGRMAEVAPAIMAAAMTSAARVAHVPRILARS AGDGLSPSARAAAFHALRAGRPQVRAGIQDGAVRLEWPLPDPVPLVSIVIPSRDRLDLITRVCRGVLAETAYAPLELIIV DNGSTDPAVLDHYATLRGDPRVQILMDPQPFNFAAMVNAGVAAASGTIVVLLNNDVAVLEPGWLEAMVRQACRPEVGAVG AKLLYGDGTLQHAGVVVGLGGRAGHILRRRPGDTPGQLGQLRVAHEVSAVTAACLAVAREKYLAVGGFDAEAFPVDFNDV DFCLRLGAAGWKTVWTPAATLAHLESVSRGPSVGAKRARFEQEAARFSERWRAVIRHDPFYHPALSVTTFGEDLE >Mature_635_residues MLPDHPAGWIVLSYAGDPTAAPRRPILRVLRGSDETVQDFVLPGASQGLAHWLGLIPPDAREIRLSAGADFALERVGARR EVEVLAQCLLRRPWRCVSALYERARGSERRYRDILRGACAVTPMDRFPSWAAARTRPARIAPAALQIRCVLLAQPGDAAA LSVTRDALNAQTHRPESIRVAWAGAPPATASGPMSHQAWDEAARFDELSGEAEALCLLRPGDVPEPEALALLARALSGAD IAYGDAIDPDGRPRLKPDWSPDLALATGYPGFPLLLSRTWLAAALARPAGRMAEVAPAIMAAAMTSAARVAHVPRILARS AGDGLSPSARAAAFHALRAGRPQVRAGIQDGAVRLEWPLPDPVPLVSIVIPSRDRLDLITRVCRGVLAETAYAPLELIIV DNGSTDPAVLDHYATLRGDPRVQILMDPQPFNFAAMVNAGVAAASGTIVVLLNNDVAVLEPGWLEAMVRQACRPEVGAVG AKLLYGDGTLQHAGVVVGLGGRAGHILRRRPGDTPGQLGQLRVAHEVSAVTAACLAVAREKYLAVGGFDAEAFPVDFNDV DFCLRLGAAGWKTVWTPAATLAHLESVSRGPSVGAKRARFEQEAARFSERWRAVIRHDPFYHPALSVTTFGEDLE
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 67836; Mature: 67836
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPDHPAGWIVLSYAGDPTAAPRRPILRVLRGSDETVQDFVLPGASQGLAHWLGLIPPDA CCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCCCCCH REIRLSAGADFALERVGARREVEVLAQCLLRRPWRCVSALYERARGSERRYRDILRGACA HEEEEECCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHC VTPMDRFPSWAAARTRPARIAPAALQIRCVLLAQPGDAAALSVTRDALNAQTHRPESIRV CCCHHHCCCCHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHHHHHCCCCCCCCEEEE AWAGAPPATASGPMSHQAWDEAARFDELSGEAEALCLLRPGDVPEPEALALLARALSGAD EECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC IAYGDAIDPDGRPRLKPDWSPDLALATGYPGFPLLLSRTWLAAALARPAGRMAEVAPAIM EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AAAMTSAARVAHVPRILARSAGDGLSPSARAAAFHALRAGRPQVRAGIQDGAVRLEWPLP HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCC DPVPLVSIVIPSRDRLDLITRVCRGVLAETAYAPLELIIVDNGSTDPAVLDHYATLRGDP CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC RVQILMDPQPFNFAAMVNAGVAAASGTIVVLLNNDVAVLEPGWLEAMVRQACRPEVGAVG EEEEEECCCCCCCHHHHHCCCEECCCEEEEEECCCEEEECCHHHHHHHHHHCCCCHHCCC AKLLYGDGTLQHAGVVVGLGGRAGHILRRRPGDTPGQLGQLRVAHEVSAVTAACLAVARE CEEEECCCCEECCCEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KYLAVGGFDAEAFPVDFNDVDFCLRLGAAGWKTVWTPAATLAHLESVSRGPSVGAKRARF HEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH EQEAARFSERWRAVIRHDPFYHPALSVTTFGEDLE HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC >Mature Secondary Structure MLPDHPAGWIVLSYAGDPTAAPRRPILRVLRGSDETVQDFVLPGASQGLAHWLGLIPPDA CCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCCCCCH REIRLSAGADFALERVGARREVEVLAQCLLRRPWRCVSALYERARGSERRYRDILRGACA HEEEEECCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHC VTPMDRFPSWAAARTRPARIAPAALQIRCVLLAQPGDAAALSVTRDALNAQTHRPESIRV CCCHHHCCCCHHHCCCCCCCCCCEEEEEEEEEECCCCCEEEEHHHHHHCCCCCCCCEEEE AWAGAPPATASGPMSHQAWDEAARFDELSGEAEALCLLRPGDVPEPEALALLARALSGAD EECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC IAYGDAIDPDGRPRLKPDWSPDLALATGYPGFPLLLSRTWLAAALARPAGRMAEVAPAIM EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AAAMTSAARVAHVPRILARSAGDGLSPSARAAAFHALRAGRPQVRAGIQDGAVRLEWPLP HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCC DPVPLVSIVIPSRDRLDLITRVCRGVLAETAYAPLELIIVDNGSTDPAVLDHYATLRGDP CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCC RVQILMDPQPFNFAAMVNAGVAAASGTIVVLLNNDVAVLEPGWLEAMVRQACRPEVGAVG EEEEEECCCCCCCHHHHHCCCEECCCEEEEEECCCEEEECCHHHHHHHHHHCCCCHHCCC AKLLYGDGTLQHAGVVVGLGGRAGHILRRRPGDTPGQLGQLRVAHEVSAVTAACLAVARE CEEEECCCCEECCCEEEECCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH KYLAVGGFDAEAFPVDFNDVDFCLRLGAAGWKTVWTPAATLAHLESVSRGPSVGAKRARF HEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH EQEAARFSERWRAVIRHDPFYHPALSVTTFGEDLE HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]