| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is bdhA [H]
Identifier: 170749882
GI number: 170749882
Start: 3693808
End: 3694593
Strand: Reverse
Name: bdhA [H]
Synonym: Mrad2831_3482
Alternate gene names: 170749882
Gene position: 3694593-3693808 (Counterclockwise)
Preceding gene: 170749883
Following gene: 170749879
Centisome position: 60.79
GC content: 68.19
Gene sequence:
>786_bases ATGACCCTCAAGACCAAGACCGCCCTCGTGACCGGCTCGACCAGCGGCATCGGGCTCGCCATCGCGCGCGCCCTCGCGGC CGAGGGGGCCAACATCGTGCTCAACGGCTTCGGGGACGCGCAGGCCGTCGAGGAGGCCCGGGCGGGGATCGAGAGCACCT ACGGGGTCAAGGCCCGGTACTCGGCCGCCGACATGAGCGAGCCCGATGCGATCGCCGCCATGGTGCGCGAGGCGGAGGAG ACCTTCGGGGCGGTCGACGTGCTGGTCAACAACGCCGGCATCCAGTTCGTATCGCCGATCGAGGAGTTTCCCGCGGAGAA GTGGGAGCAGATCATCGCGATCAACCTGTCCTCGGCCTTCCACACGATGCACGCGGCGATTCCCGGGATGAAGGCGCGGG GTTGGGGGCGGATCATCAACACGGCCTCGGCCCACTCTCTGGTGGCCTCGCCGTTCAAGTCGGCCTACGTGGCGGCCAAG CACGGGATCGCGGGCCTGAGCAAGACGGCGGCGCTGGAACTCGCCCCGCACAGGATCACGGTGAACTGCATCTCGCCCGG CTACGTCTGGACGCCTCTGGTGGAGGCCCAGATCCCCGACACGATGAAGGCCCGCGGCCTCACCAAGGAGCAGGTGATCG AGGACGTGATGCTGAAGGCGCAGCCGACCAAGGAGTTCGTCACCGTCGACCAGGTGGCCGCGCTGGCGGTGTTCCTGTGC TCCGACGCGGCGAGCCAGATCACGGGCGCCAATATCAGCATGGACGGTGGCTGGACCGCGCAGTAG
Upstream 100 bases:
>100_bases CGGACTCCCTGTCCCGCGCTACTTAGGTCGCGACCTGTCCCACCGTCGCCCGGCCGTGACCGCGTCCGAGCGGCGGCGCG CCCGCGTTCCAGGAGGCCCC
Downstream 100 bases:
>100_bases CGCGACCGGCCGCGGCGGCCGGGCCCGGTCGCCGCCAAGGCCCCGCCCAAATCCGGGCGGGGCCTCTCCCGGTCAGCGGC GACCGTGGACCAGCAGGGCG
Product: 3-hydroxybutyrate dehydrogenase
Products: NA
Alternate protein names: BDH; 3-hydroxybutyrate dehydrogenase; 3-HBDH [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MTLKTKTALVTGSTSGIGLAIARALAAEGANIVLNGFGDAQAVEEARAGIESTYGVKARYSAADMSEPDAIAAMVREAEE TFGAVDVLVNNAGIQFVSPIEEFPAEKWEQIIAINLSSAFHTMHAAIPGMKARGWGRIINTASAHSLVASPFKSAYVAAK HGIAGLSKTAALELAPHRITVNCISPGYVWTPLVEAQIPDTMKARGLTKEQVIEDVMLKAQPTKEFVTVDQVAALAVFLC SDAASQITGANISMDGGWTAQ
Sequences:
>Translated_261_residues MTLKTKTALVTGSTSGIGLAIARALAAEGANIVLNGFGDAQAVEEARAGIESTYGVKARYSAADMSEPDAIAAMVREAEE TFGAVDVLVNNAGIQFVSPIEEFPAEKWEQIIAINLSSAFHTMHAAIPGMKARGWGRIINTASAHSLVASPFKSAYVAAK HGIAGLSKTAALELAPHRITVNCISPGYVWTPLVEAQIPDTMKARGLTKEQVIEDVMLKAQPTKEFVTVDQVAALAVFLC SDAASQITGANISMDGGWTAQ >Mature_260_residues TLKTKTALVTGSTSGIGLAIARALAAEGANIVLNGFGDAQAVEEARAGIESTYGVKARYSAADMSEPDAIAAMVREAEET FGAVDVLVNNAGIQFVSPIEEFPAEKWEQIIAINLSSAFHTMHAAIPGMKARGWGRIINTASAHSLVASPFKSAYVAAKH GIAGLSKTAALELAPHRITVNCISPGYVWTPLVEAQIPDTMKARGLTKEQVIEDVMLKAQPTKEFVTVDQVAALAVFLCS DAASQITGANISMDGGWTAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=32.421875, Blast_Score=124, Evalue=9e-29, Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=29.0566037735849, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI20149619, Length=252, Percent_Identity=29.7619047619048, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=31.1787072243346, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI7705925, Length=265, Percent_Identity=30.5660377358491, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI66933014, Length=237, Percent_Identity=29.535864978903, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI5031737, Length=260, Percent_Identity=30, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.957528957529, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI59889578, Length=242, Percent_Identity=30.9917355371901, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=31.3432835820896, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI4504505, Length=265, Percent_Identity=27.1698113207547, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=34.3589743589744, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4503301, Length=209, Percent_Identity=30.1435406698565, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI142976729, Length=212, Percent_Identity=29.7169811320755, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4758504, Length=209, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI223718074, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=28.0632411067194, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=29.3193717277487, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=31.0344827586207, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=25.0980392156863, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI226371731, Length=190, Percent_Identity=31.0526315789474, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=23.0366492146597, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=26.4248704663212, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI83715985, Length=191, Percent_Identity=30.3664921465969, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI109715829, Length=199, Percent_Identity=31.1557788944724, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=167, Percent_Identity=31.1377245508982, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=36.046511627907, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787335, Length=258, Percent_Identity=33.7209302325581, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI87082160, Length=258, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=32.6771653543307, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=31.6602316602317, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1789208, Length=263, Percent_Identity=31.9391634980989, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=32.156862745098, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=30.078125, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=31.5384615384615, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=29.5719844357977, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=27.0588235294118, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=26.615969581749, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=30.5263157894737, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=30.3501945525292, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=29.7297297297297, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=30.5343511450382, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=30.3501945525292, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=27.9245283018868, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17560332, Length=275, Percent_Identity=30.5454545454545, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=28.5185185185185, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=26.953125, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=30.6878306878307, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=27.1317829457364, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203115, Length=245, Percent_Identity=26.530612244898, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193203117, Length=242, Percent_Identity=26.8595041322314, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=31.7164179104478, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=27.4111675126904, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17568967, Length=231, Percent_Identity=26.8398268398268, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=29.811320754717, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=30.7407407407407, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=25.5725190839695, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.9850746268657, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=28.5185185185185, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538480, Length=276, Percent_Identity=27.536231884058, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI115534694, Length=267, Percent_Identity=27.3408239700375, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=28.1481481481481, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560150, Length=272, Percent_Identity=27.2058823529412, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=30.3370786516854, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=25.5725190839695, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17562904, Length=210, Percent_Identity=30, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71982365, Length=206, Percent_Identity=27.6699029126214, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=27.9850746268657, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538182, Length=213, Percent_Identity=28.169014084507, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=28.4263959390863, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=26.7924528301887, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=26.7657992565056, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555612, Length=218, Percent_Identity=28.4403669724771, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71997099, Length=245, Percent_Identity=27.3469387755102, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567345, Length=233, Percent_Identity=24.0343347639485, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32563809, Length=257, Percent_Identity=25.2918287937743, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17507613, Length=207, Percent_Identity=25.6038647342995, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=31.2820512820513, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.5193798449612, Blast_Score=82, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=243, Percent_Identity=25.9259259259259, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=217, Percent_Identity=26.2672811059908, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24644339, Length=273, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=30.0380228136882, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI23397609, Length=263, Percent_Identity=32.6996197718631, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=29.7709923664122, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=30.5343511450382, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24639444, Length=265, Percent_Identity=30.5660377358491, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI18859837, Length=210, Percent_Identity=30.952380952381, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=28.4046692607004, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI21358495, Length=253, Percent_Identity=24.901185770751, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI28574402, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24584744, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=32.4742268041237, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI281364892, Length=177, Percent_Identity=32.2033898305085, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584748, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI161076933, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21356301, Length=196, Percent_Identity=27.5510204081633, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24644337, Length=208, Percent_Identity=28.3653846153846, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI17737361, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI21355631, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=27.5132275132275, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24648944, Length=222, Percent_Identity=29.2792792792793, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI281364494, Length=243, Percent_Identity=27.5720164609054, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=212, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007236, Length=199, Percent_Identity=28.1407035175879, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011294 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.30 [H]
Molecular weight: Translated: 27358; Mature: 27226
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKTKTALVTGSTSGIGLAIARALAAEGANIVLNGFGDAQAVEEARAGIESTYGVKARY CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCEEEE SAADMSEPDAIAAMVREAEETFGAVDVLVNNAGIQFVSPIEEFPAEKWEQIIAINLSSAF CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCHHHCCHHHHHHEEEEECHHHH HTMHAAIPGMKARGWGRIINTASAHSLVASPFKSAYVAAKHGIAGLSKTAALELAPHRIT HHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCEEE VNCISPGYVWTPLVEAQIPDTMKARGLTKEQVIEDVMLKAQPTKEFVTVDQVAALAVFLC EEEECCCCEECCEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH SDAASQITGANISMDGGWTAQ HHHHHHHCCCEEEECCCCCCC >Mature Secondary Structure TLKTKTALVTGSTSGIGLAIARALAAEGANIVLNGFGDAQAVEEARAGIESTYGVKARY CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCEEEE SAADMSEPDAIAAMVREAEETFGAVDVLVNNAGIQFVSPIEEFPAEKWEQIIAINLSSAF CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCHHHCCHHHHHHEEEEECHHHH HTMHAAIPGMKARGWGRIINTASAHSLVASPFKSAYVAAKHGIAGLSKTAALELAPHRIT HHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCEEE VNCISPGYVWTPLVEAQIPDTMKARGLTKEQVIEDVMLKAQPTKEFVTVDQVAALAVFLC EEEECCCCEECCEECCCCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH SDAASQITGANISMDGGWTAQ HHHHHHHCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9922248; 11481431 [H]