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The map label for this gene is yckA [H]

Identifier: 170749709

GI number: 170749709

Start: 3509590

End: 3510441

Strand: Reverse

Name: yckA [H]

Synonym: Mrad2831_3308

Alternate gene names: 170749709

Gene position: 3510441-3509590 (Counterclockwise)

Preceding gene: 170749710

Following gene: 170749708

Centisome position: 57.76

GC content: 71.36

Gene sequence:

>852_bases
ATGAAAGCGGCCGATCCGCGGGGCGGGCGGCCGAATGCCCTGCCGGTCCTCCTGCCCTTCGCGCTCCCGGAGGACCGCGC
GGCGGCGCGCCTGCGCCCGGCCCATCTCTGGCTGCTCGCCGCGCTCGCCCTCGTCGCCGTCCCGGCCTGGGCGCAGGGCG
GGGCCGCCGCGCTGTCGCCGCTGGAGGTCGTGATCAAGTGGGCGCCCCTCCTGCTCACGGGCTTCGCCTTCAACGTCGCG
ATCTCGCTGATGGCGATGGCGATCGGGACCGTGGCGGGCATCGGGCTCGGGCTGGCCATGCTGGCCGAGGGGCGGATCCT
GCCCCGCCTCGCGTGGTGCGCCACGCAGGTCTTCCGCAACGTGCCCTGGCTGGTCCTGCTGTTCTTCGTGATGTTCCTCG
TGCCGTTCCAGGTCACGGTGTTCGGTGTCCGCGTGCCGCTGCCCGACTGGGTCAAGGCGACCTTCGGCTTCAGCCTGCCG
GTCATGGCCAACGTCGCCGAGATCGTCCGCGGCGCGGTGCGCTCGGTGCCGAACACCCAGTGGGAGGCCGCCGAGTCGCT
GGCCTTCACCCGGCGGCAGACGCTATGGCGCATCATCCTGCCCCAATGCGCGAAGCGCATGCTGCCGCCCTGGATGAACG
TCTACTCACTCATCGCGATGGCGACCGTGCAGGCCTCCATCGTCGGCGTCACCGAGATGCTGACGCTGACCGCGCAGGTG
CACGCCGCCGAGGGCGGCCGCCCCGAGCTGTTCGCGCCGCTCTACGGCTTCGCGCTCTTGTGCTTCTTCCTCTACTGCTA
CCCGATCGACCGGTTCACCGCCGCCCTGGAACGCCGCTTCGAGACCCGCTGA

Upstream 100 bases:

>100_bases
TGATGCTGGTGCTGCTGGCGACTTACGCGGTCCTCGTCGGCGTGCTCGTCTGGATCATGCACCGCTGGGAGCGCGCCCTG
CGCATCCCGGGATACGGCCG

Downstream 100 bases:

>100_bases
GACCATGACGCGCGCGACCCTGGCCGCCACCCCGTCCCCGACCTGGACCCCCGATCAGCCGATCGTCCGCATCGCCGGCG
TGCACAAGTCCTTCGGGACC

Product: polar amino acid ABC transporter inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKAADPRGGRPNALPVLLPFALPEDRAAARLRPAHLWLLAALALVAVPAWAQGGAAALSPLEVVIKWAPLLLTGFAFNVA
ISLMAMAIGTVAGIGLGLAMLAEGRILPRLAWCATQVFRNVPWLVLLFFVMFLVPFQVTVFGVRVPLPDWVKATFGFSLP
VMANVAEIVRGAVRSVPNTQWEAAESLAFTRRQTLWRIILPQCAKRMLPPWMNVYSLIAMATVQASIVGVTEMLTLTAQV
HAAEGGRPELFAPLYGFALLCFFLYCYPIDRFTAALERRFETR

Sequences:

>Translated_283_residues
MKAADPRGGRPNALPVLLPFALPEDRAAARLRPAHLWLLAALALVAVPAWAQGGAAALSPLEVVIKWAPLLLTGFAFNVA
ISLMAMAIGTVAGIGLGLAMLAEGRILPRLAWCATQVFRNVPWLVLLFFVMFLVPFQVTVFGVRVPLPDWVKATFGFSLP
VMANVAEIVRGAVRSVPNTQWEAAESLAFTRRQTLWRIILPQCAKRMLPPWMNVYSLIAMATVQASIVGVTEMLTLTAQV
HAAEGGRPELFAPLYGFALLCFFLYCYPIDRFTAALERRFETR
>Mature_283_residues
MKAADPRGGRPNALPVLLPFALPEDRAAARLRPAHLWLLAALALVAVPAWAQGGAAALSPLEVVIKWAPLLLTGFAFNVA
ISLMAMAIGTVAGIGLGLAMLAEGRILPRLAWCATQVFRNVPWLVLLFFVMFLVPFQVTVFGVRVPLPDWVKATFGFSLP
VMANVAEIVRGAVRSVPNTQWEAAESLAFTRRQTLWRIILPQCAKRMLPPWMNVYSLIAMATVQASIVGVTEMLTLTAQV
HAAEGGRPELFAPLYGFALLCFFLYCYPIDRFTAALERRFETR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=174, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082239, Length=230, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=27.6995305164319, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=25.2336448598131, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30999; Mature: 30999

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAADPRGGRPNALPVLLPFALPEDRAAARLRPAHLWLLAALALVAVPAWAQGGAAALSP
CCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LEVVIKWAPLLLTGFAFNVAISLMAMAIGTVAGIGLGLAMLAEGRILPRLAWCATQVFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
VPWLVLLFFVMFLVPFQVTVFGVRVPLPDWVKATFGFSLPVMANVAEIVRGAVRSVPNTQ
CCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
WEAAESLAFTRRQTLWRIILPQCAKRMLPPWMNVYSLIAMATVQASIVGVTEMLTLTAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAAEGGRPELFAPLYGFALLCFFLYCYPIDRFTAALERRFETR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKAADPRGGRPNALPVLLPFALPEDRAAARLRPAHLWLLAALALVAVPAWAQGGAAALSP
CCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LEVVIKWAPLLLTGFAFNVAISLMAMAIGTVAGIGLGLAMLAEGRILPRLAWCATQVFRN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
VPWLVLLFFVMFLVPFQVTVFGVRVPLPDWVKATFGFSLPVMANVAEIVRGAVRSVPNTQ
CCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
WEAAESLAFTRRQTLWRIILPQCAKRMLPPWMNVYSLIAMATVQASIVGVTEMLTLTAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAAEGGRPELFAPLYGFALLCFFLYCYPIDRFTAALERRFETR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]