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The map label for this gene is ycdB [H]

Identifier: 170749680

GI number: 170749680

Start: 3475072

End: 3476313

Strand: Reverse

Name: ycdB [H]

Synonym: Mrad2831_3278

Alternate gene names: 170749680

Gene position: 3476313-3475072 (Counterclockwise)

Preceding gene: 170749681

Following gene: 170749672

Centisome position: 57.2

GC content: 71.66

Gene sequence:

>1242_bases
ATGCGGTTCCCTTCACCGGTCACCACCCGCCGCCGGTTCCTCGGCGGCTTCGGCGCCGCCGCGCTCCTCGGGCCCGCCCG
GGCCGAGGACGCGACGCCGACCACCGCCACCGAGGGCACGCTCGTCGCCCAGCCCTTCTACGGGCCTCATCAGGCCGGGA
TCGTCACCCCGCAGCCGGCCGCCGCCCTCTACGTCGCCTTCGACGTGCTGGCCGAGCGGCGCGGCGAGCTGCCCCACCTG
TTCCGGACGCTCACCGAGCGCCTCGCCTTCCTGACGCGGGGCGGCGCCGTGCCCGATCTCCACCTCCAACTGCCGCCGCG
CGATTCCGGCATCCTCGGGCCGACGGTCCTGCCGGACAATCTCACCGCCACGGTCTCGGTCGGCGCGAGCCTGTTCGACT
ACCGGTTCGGCCTGGCCCGCGCCCGCCCGCGCCATCTCGGACCCATGGAACGCTTCCCCAACGACGCCCTCGACCCGGCC
CAGTGCCACGGCGACCTGTTGATCCAGTTCTGCTCGAACACCGCCGAGACCAACATCCACGCCCTGCGCGACGTCATCAA
GGCGACGCCCGGCCTCCTCACGCCGCGCTGGAAGATCGAGGGTTTCCTGCCGCCCCACGTGGTGAAGACCATGGGGGCCG
ACACCGTGCGGAACATGCTCGGCTTCAAGGACGGCACCGCCAACCTCGACGTGCGGGATCCCCGGCTGATGGACCGCTAC
GTCTGGGTCGGGGCGGGACAGGACGAGCCGGCCTGGACGGCGGGCGGAAGCTACCAGGTGGTGCGGATCATCCGCACCCT
CGTCGAGCGCTGGGACCGCACGCCGCTCGGCGAGCAGGAGGCCATCATCGGCCGGCACAAGGGCAGCGGCGCGCCGCTCA
GGCAGGGACACGAGCGCGAGGTTCCCGACTACGCCGCCGACCCGGACGGCGAGGCCATCTCGCTCGCCGCCCATATCCGT
CTGGCCAATCCGCGCCTGCCGGGCACCGAGGGCAGCCTGATCCTGCGCCGCAGCTACAACTATTCCCGCGGGCTGACCGC
CGCCGGCCAGCTCGACATGGGCCTGCTGTTCGTCTGCTACCAGGCCGATCTCTCGGCCGGCTTCATCACGGTGCAGAACC
GTCTGTCCGGCGAGGGCCTCGAAGAGTACATCCGCCCGACCGGCGGCGGCTATTTCTTCGCTCTTCCCGGCGTTCCGGGT
CCCGAAGCCTTTCTCGGTGAAGGCCTGCTGGCCGCGGTCTAG

Upstream 100 bases:

>100_bases
GGCCGGCTCGGTCTAGATTGATATCATTGCCGAGGTGTCGTCCTGTGGCCTTCCTTATAGGCTACAGTGCGGTAGCACGA
CCAGATTTTGCCGAGCGACA

Downstream 100 bases:

>100_bases
ACATCGCCGTACCAGGTACCGGTTTCCGGATGCGACGGAGCGGCCGCCGGAGGTCGCAGCCGACCCGTTGCGTTGGATCA
ACGCGCGACGGCCGGCTCCA

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MRFPSPVTTRRRFLGGFGAAALLGPARAEDATPTTATEGTLVAQPFYGPHQAGIVTPQPAAALYVAFDVLAERRGELPHL
FRTLTERLAFLTRGGAVPDLHLQLPPRDSGILGPTVLPDNLTATVSVGASLFDYRFGLARARPRHLGPMERFPNDALDPA
QCHGDLLIQFCSNTAETNIHALRDVIKATPGLLTPRWKIEGFLPPHVVKTMGADTVRNMLGFKDGTANLDVRDPRLMDRY
VWVGAGQDEPAWTAGGSYQVVRIIRTLVERWDRTPLGEQEAIIGRHKGSGAPLRQGHEREVPDYAADPDGEAISLAAHIR
LANPRLPGTEGSLILRRSYNYSRGLTAAGQLDMGLLFVCYQADLSAGFITVQNRLSGEGLEEYIRPTGGGYFFALPGVPG
PEAFLGEGLLAAV

Sequences:

>Translated_413_residues
MRFPSPVTTRRRFLGGFGAAALLGPARAEDATPTTATEGTLVAQPFYGPHQAGIVTPQPAAALYVAFDVLAERRGELPHL
FRTLTERLAFLTRGGAVPDLHLQLPPRDSGILGPTVLPDNLTATVSVGASLFDYRFGLARARPRHLGPMERFPNDALDPA
QCHGDLLIQFCSNTAETNIHALRDVIKATPGLLTPRWKIEGFLPPHVVKTMGADTVRNMLGFKDGTANLDVRDPRLMDRY
VWVGAGQDEPAWTAGGSYQVVRIIRTLVERWDRTPLGEQEAIIGRHKGSGAPLRQGHEREVPDYAADPDGEAISLAAHIR
LANPRLPGTEGSLILRRSYNYSRGLTAAGQLDMGLLFVCYQADLSAGFITVQNRLSGEGLEEYIRPTGGGYFFALPGVPG
PEAFLGEGLLAAV
>Mature_413_residues
MRFPSPVTTRRRFLGGFGAAALLGPARAEDATPTTATEGTLVAQPFYGPHQAGIVTPQPAAALYVAFDVLAERRGELPHL
FRTLTERLAFLTRGGAVPDLHLQLPPRDSGILGPTVLPDNLTATVSVGASLFDYRFGLARARPRHLGPMERFPNDALDPA
QCHGDLLIQFCSNTAETNIHALRDVIKATPGLLTPRWKIEGFLPPHVVKTMGADTVRNMLGFKDGTANLDVRDPRLMDRY
VWVGAGQDEPAWTAGGSYQVVRIIRTLVERWDRTPLGEQEAIIGRHKGSGAPLRQGHEREVPDYAADPDGEAISLAAHIR
LANPRLPGTEGSLILRRSYNYSRGLTAAGQLDMGLLFVCYQADLSAGFITVQNRLSGEGLEEYIRPTGGGYFFALPGVPG
PEAFLGEGLLAAV

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=409, Percent_Identity=59.4132029339853, Blast_Score=486, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 44655; Mature: 44655

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPSPVTTRRRFLGGFGAAALLGPARAEDATPTTATEGTLVAQPFYGPHQAGIVTPQPA
CCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCH
AALYVAFDVLAERRGELPHLFRTLTERLAFLTRGGAVPDLHLQLPPRDSGILGPTVLPDN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEECCCC
LTATVSVGASLFDYRFGLARARPRHLGPMERFPNDALDPAQCHGDLLIQFCSNTAETNIH
CEEEEECCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ALRDVIKATPGLLTPRWKIEGFLPPHVVKTMGADTVRNMLGFKDGTANLDVRDPRLMDRY
HHHHHHHHCCCCCCCCEEECCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHEEEE
VWVGAGQDEPAWTAGGSYQVVRIIRTLVERWDRTPLGEQEAIIGRHKGSGAPLRQGHERE
EEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
VPDYAADPDGEAISLAAHIRLANPRLPGTEGSLILRRSYNYSRGLTAAGQLDMGLLFVCY
CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
QADLSAGFITVQNRLSGEGLEEYIRPTGGGYFFALPGVPGPEAFLGEGLLAAV
ECCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHCCCHHHCC
>Mature Secondary Structure
MRFPSPVTTRRRFLGGFGAAALLGPARAEDATPTTATEGTLVAQPFYGPHQAGIVTPQPA
CCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCH
AALYVAFDVLAERRGELPHLFRTLTERLAFLTRGGAVPDLHLQLPPRDSGILGPTVLPDN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEECCCC
LTATVSVGASLFDYRFGLARARPRHLGPMERFPNDALDPAQCHGDLLIQFCSNTAETNIH
CEEEEECCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ALRDVIKATPGLLTPRWKIEGFLPPHVVKTMGADTVRNMLGFKDGTANLDVRDPRLMDRY
HHHHHHHHCCCCCCCCEEECCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHEEEE
VWVGAGQDEPAWTAGGSYQVVRIIRTLVERWDRTPLGEQEAIIGRHKGSGAPLRQGHERE
EEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
VPDYAADPDGEAISLAAHIRLANPRLPGTEGSLILRRSYNYSRGLTAAGQLDMGLLFVCY
CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
QADLSAGFITVQNRLSGEGLEEYIRPTGGGYFFALPGVPGPEAFLGEGLLAAV
ECCCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCCCHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]