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The map label for this gene is ybiS [H]

Identifier: 170749159

GI number: 170749159

Start: 2889906

End: 2890484

Strand: Reverse

Name: ybiS [H]

Synonym: Mrad2831_2752

Alternate gene names: 170749159

Gene position: 2890484-2889906 (Counterclockwise)

Preceding gene: 170749162

Following gene: 170749158

Centisome position: 47.56

GC content: 69.78

Gene sequence:

>579_bases
ATGCGCATCATCTCGGTACTCGGCTGCGCCCTGCTCCTGGCAGGCTGCACCTTCAAGGGCGTGCCCGATCCCGCCCTCTC
GGCCCGCGACGCCGAGTACATGGCCCTCGTCCCGGAGGCCGAGTTCGATCCGCACTTCGCGCGCTACGAGATCGCCGCCC
CGACCCGGGAGGCGCCCGGCACGATCGTGGTCGAGACCAAGGAGCGCCAGCTCTACCTCGTCCTGCCGAACGGCCGGGCG
ATGCGCTACGGCGTCTCGGTGGGCGACGAGGCCTATGGCTGGACCGGCACCGCTCGGATCGACCGCAAGGCGGAATGGCC
GGCCTGGAATCCGCCGGCCGAGATGATCAAGCGCTGGCCGCACGTCCACGCCATGCAGGGCGGCCCGATGAATCCGCTCG
GCGCCCGGGCCCTGTACCTGTCGGATCGCGGCCGCGACACGCTCTATCGGATCCACGGCACCAACGAGCCGGAGAAGATC
GGTCAGGCGGTCTCCTCCGGCTGCATCCGGATGCGCAACATCGACGTGGTCGACCTCTACAACCGGGTCCCCGTCGGGGC
CACGGTCATCGTCCGGTAA

Upstream 100 bases:

>100_bases
CGGGGTGCCGTTGCCCCCTTATGGTTGCGCGATTCGTCAACGGGACGGATCCGGATCGCCGATCCTCCGTCCGCGGCCGC
GACGATCCTCGAGGCGGGAC

Downstream 100 bases:

>100_bases
CGCAACCGGTCAACGTCCCAATAAGCCTGCTTGCTCGGGGGGTGTTTACCTGAACTTCCGTTCAGATCTCGCCATTAACC
TCTGGAAGGGGGGCGGTCCC

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRIISVLGCALLLAGCTFKGVPDPALSARDAEYMALVPEAEFDPHFARYEIAAPTREAPGTIVVETKERQLYLVLPNGRA
MRYGVSVGDEAYGWTGTARIDRKAEWPAWNPPAEMIKRWPHVHAMQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKI
GQAVSSGCIRMRNIDVVDLYNRVPVGATVIVR

Sequences:

>Translated_192_residues
MRIISVLGCALLLAGCTFKGVPDPALSARDAEYMALVPEAEFDPHFARYEIAAPTREAPGTIVVETKERQLYLVLPNGRA
MRYGVSVGDEAYGWTGTARIDRKAEWPAWNPPAEMIKRWPHVHAMQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKI
GQAVSSGCIRMRNIDVVDLYNRVPVGATVIVR
>Mature_192_residues
MRIISVLGCALLLAGCTFKGVPDPALSARDAEYMALVPEAEFDPHFARYEIAAPTREAPGTIVVETKERQLYLVLPNGRA
MRYGVSVGDEAYGWTGTARIDRKAEWPAWNPPAEMIKRWPHVHAMQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKI
GQAVSSGCIRMRNIDVVDLYNRVPVGATVIVR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=139, Percent_Identity=37.410071942446, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788299, Length=140, Percent_Identity=37.8571428571429, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 21231; Mature: 21231

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIISVLGCALLLAGCTFKGVPDPALSARDAEYMALVPEAEFDPHFARYEIAAPTREAPG
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCC
TIVVETKERQLYLVLPNGRAMRYGVSVGDEAYGWTGTARIDRKAEWPAWNPPAEMIKRWP
EEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCC
HVHAMQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKIGQAVSSGCIRMRNIDVVDLY
CEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCEEECCCCEEECC
NRVPVGATVIVR
CCCCCCEEEEEC
>Mature Secondary Structure
MRIISVLGCALLLAGCTFKGVPDPALSARDAEYMALVPEAEFDPHFARYEIAAPTREAPG
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCC
TIVVETKERQLYLVLPNGRAMRYGVSVGDEAYGWTGTARIDRKAEWPAWNPPAEMIKRWP
EEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCC
HVHAMQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKIGQAVSSGCIRMRNIDVVDLY
CEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCEEECCCCEEECC
NRVPVGATVIVR
CCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]