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The map label for this gene is yncD [C]

Identifier: 170749121

GI number: 170749121

Start: 2858244

End: 2860814

Strand: Reverse

Name: yncD [C]

Synonym: Mrad2831_2714

Alternate gene names: 170749121

Gene position: 2860814-2858244 (Counterclockwise)

Preceding gene: 170749122

Following gene: 170749120

Centisome position: 47.07

GC content: 68.07

Gene sequence:

>2571_bases
ATGTCACTTCGGGCGCTTCGGAGCAGCCTGGTCGCGTCGGCATCGGTTCTCGCCGGGACGGTCCTTCCCGCGGCGGTGCA
GGCTCAGCAATCGGTGACGCTCGGCGAGATCAGCGTCGTCTCGACGTCGCCGGTCGGGGCCGGCGGCGGCAGTTCGAGCC
AGGCGCAGATCTTCAACGGGTCCGGCCCGGTGCCGCCGGCCGGCTCGGTGGGACCGAGCGCCGGCGTGCGGCTGCGCGGC
TCCGAGCAGCCCCTCTACAAGATCCCCAGCACCGTCGAGTCGGTCACGGCGAGCGATCTCACGATCGATCGCGCCAGCGA
CAACCTGACCACGACGCTGGCCCGGCGCACGCCCGGCATCAACGTCTCCGACTCGCAGGGCAACAACAACCGCGTCGACA
TCACCTACCGCGGCTTCACGGCCTCGCCCGTGCAGGGCGTGCCGCAGGGTCTCGCCGTCTACCAGAACGGCGTGCGCATC
AACGAGGCCTTCGGCGACATCGTCAATTTCGACCTCATCCCCCCGCAGGCGATCCAGCGCATCGACGTCGTCACCGGAAA
CCCGGTCTTCGGCCTCAACGCCCTCGGCGGCGCGGTCAACATCCAGATGAAGAACGGCTTCACCTGGCAGGGCACCGAGA
TCTCGGCCTGGGGCGGCTCGGACGCGCGCACCGCCGGCTACCTCGAGTACGGCAAGGTCTCCGGCCCCTGGAGCGTCTAC
TTCACCGGCGACGGCCTGAACGACCGCGGCTGGCGCTACGAGAGCCCGAGCACGATCGGCCGGCTCTACGGCGACATCGG
CTACCGCTCGCAGGATTCGGAGTTCCACCTGATCGGGCTCGCCGCCCGCAGCTTCTACGGTGCGGCCGCCGCCACGCCGG
TGGACTTCACCCACCGCGACCCGCGGGCGATCTTCACCTACCCGCAGACCACCACCACCGAGGTAGGCACGCTCCAGCTC
ACCGGCCGGGTCGACATCTCGCCGACCTGGGACCTCGCCGGCAACGCCTATTTCCGCCGCTTCAGCCAGACCTACGTCGA
CGGCAACGACGGCAACTTCGAGAACTGCAGCACGCGCTCCAGCTTCCGCGGCAACCTCTGCTTCGAGGATGACGGCTTCA
GCCCGGCGGCCGGCCAGTCGCAGACCGCGTTCCGCAACCAGTTCCTGATCCTGGGCCAGCAGAACCAGCGCATCCCGTTC
CGGTCCGGCATCCCGTACGGCACGCTGGACACGACCCGGACGGAAGCCACCGGCTTCGGCGGCTCGCTCCAGGCCGCCAA
CCGCGACCGGATCTTCGGCCTGTCCAACAGCTTCGTGGTCGGTGGCAGCATCGATGCGGCCAACTACGGGTTCAAGTCGT
CCAGCACCCTGGGCGTCATCAACCCGAACCTGTCGATCACCACCGATCCGAGCAACCCGTTCTACGGCAACATCCCGGGC
CTCGGCACGCCGCAGCTGCGGACCGCGGGCGCGCTCGGCATCGCGCCGAGCTCGGTCAACGGCTCTAATCTCTACATGGG
CCTCTACACCCTCGACACGCTCGACGTGACCGACCGGCTGTCGCTGACCGCCGGCGCCCGGCTCAACTTCGCGCGCATCC
AGAGCGAGGATCTGACCGGCTTCTCGCCGGACGTGACCGGCACGCACTACTTCAACAAGATCAACCCGGTCGCCGGCCTG
ACCTACCGGTTCTTCGACGCGCTCAACCTCTACGGCAGCTACTCGGAATCGAACCGCGCCCCGACCCCGCTGGAGCTGGC
CTGCGCAAACCCGGACCGGCCGTGCCTGCTGCCGAACTCGCTGGTGGCCGACCCGCCGCTCAAGCAGGTCACCGGGCGGA
CCTACGAGGTCGGATTCCGCGGCCAGCTGCCGAACACCTATGACGGCGGCATCATCACCTACAAGATCGGCGCCTTCCGC
ACCGACCTCGCCAACGACATCCTGTCGCTGGCCACCCCCGGCAACACCGCCCGCGCCTACTTCGTCAACGTGCCGTCGAC
GCAGCGGCAGGGCATCGAGGTCGGCGGCGAGTACACGGCCGATTACCTGCGGGTCTACGCCAACTACGCCCTGGTCGACG
CGACCTTCCAGTTCAACGGCACCCTGTCGTCGCCCAACAACCCGCTCGCGGATGACGGCGCGATCCAGGTCCGCAAGGGC
AACGTCGTGCCGCTGGTGCCGACCCACCAGATCAAGGCCGGCTTCGACTACTTCGTCACGCCCGACTGGCAGTTCGGCCT
CTACCTCCAGGCCTTCTCGTCGTCCTACTTCCGCGGCGACGAGTCGAACCTGAACCGCAAGCTGCCGCCCTACTACGTGC
TGAACTTCCAGACCAAGTACCAGGTCACGAAGAACCTCGAGGTGTTCGGCCTCATCACCAACCTGACCAACAACCGCTAC
GCCACGTTCGGCACCTTCGCCGAGCCGGGCGCGGTGGCCGGCAACCTGCGGATCAGCGATCCGCGGACCACGACCCTGGC
GCAGCCCTTCTCGGTCTACGCCGGCATCCGCTACGCCTTCGGCGCCGATCCGGTGCCGATGTCGCCGGAGCCGATCATCC
GGAAGTACTGA

Upstream 100 bases:

>100_bases
TCACGTGTTCTTGAACCAATTGTGCGTGATCCCGGCACCCGCCAAGAGAGACCCAAGCTCGGCAGTCACGAGCACGTGTT
TGGGTTTGAGGGGGTAGGGG

Downstream 100 bases:

>100_bases
CCCGTCCGCGATGGCGAGGGGCGGGCGCCTCCCGCGGCCTGAGGGCCGCGCGGGGCGCCCGTCGCGTTCCGGGGCTGGCG
CATGCGGCCTCCTGTCTCGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; NB-Dependent Siderophore Receptor; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; Ferrienterobactin-Like Protein; Iron Complex Outer Membrane Receptor Protein; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 856; Mature: 855

Protein sequence:

>856_residues
MSLRALRSSLVASASVLAGTVLPAAVQAQQSVTLGEISVVSTSPVGAGGGSSSQAQIFNGSGPVPPAGSVGPSAGVRLRG
SEQPLYKIPSTVESVTASDLTIDRASDNLTTTLARRTPGINVSDSQGNNNRVDITYRGFTASPVQGVPQGLAVYQNGVRI
NEAFGDIVNFDLIPPQAIQRIDVVTGNPVFGLNALGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKVSGPWSVY
FTGDGLNDRGWRYESPSTIGRLYGDIGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHRDPRAIFTYPQTTTTEVGTLQL
TGRVDISPTWDLAGNAYFRRFSQTYVDGNDGNFENCSTRSSFRGNLCFEDDGFSPAAGQSQTAFRNQFLILGQQNQRIPF
RSGIPYGTLDTTRTEATGFGGSLQAANRDRIFGLSNSFVVGGSIDAANYGFKSSSTLGVINPNLSITTDPSNPFYGNIPG
LGTPQLRTAGALGIAPSSVNGSNLYMGLYTLDTLDVTDRLSLTAGARLNFARIQSEDLTGFSPDVTGTHYFNKINPVAGL
TYRFFDALNLYGSYSESNRAPTPLELACANPDRPCLLPNSLVADPPLKQVTGRTYEVGFRGQLPNTYDGGIITYKIGAFR
TDLANDILSLATPGNTARAYFVNVPSTQRQGIEVGGEYTADYLRVYANYALVDATFQFNGTLSSPNNPLADDGAIQVRKG
NVVPLVPTHQIKAGFDYFVTPDWQFGLYLQAFSSSYFRGDESNLNRKLPPYYVLNFQTKYQVTKNLEVFGLITNLTNNRY
ATFGTFAEPGAVAGNLRISDPRTTTLAQPFSVYAGIRYAFGADPVPMSPEPIIRKY

Sequences:

>Translated_856_residues
MSLRALRSSLVASASVLAGTVLPAAVQAQQSVTLGEISVVSTSPVGAGGGSSSQAQIFNGSGPVPPAGSVGPSAGVRLRG
SEQPLYKIPSTVESVTASDLTIDRASDNLTTTLARRTPGINVSDSQGNNNRVDITYRGFTASPVQGVPQGLAVYQNGVRI
NEAFGDIVNFDLIPPQAIQRIDVVTGNPVFGLNALGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKVSGPWSVY
FTGDGLNDRGWRYESPSTIGRLYGDIGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHRDPRAIFTYPQTTTTEVGTLQL
TGRVDISPTWDLAGNAYFRRFSQTYVDGNDGNFENCSTRSSFRGNLCFEDDGFSPAAGQSQTAFRNQFLILGQQNQRIPF
RSGIPYGTLDTTRTEATGFGGSLQAANRDRIFGLSNSFVVGGSIDAANYGFKSSSTLGVINPNLSITTDPSNPFYGNIPG
LGTPQLRTAGALGIAPSSVNGSNLYMGLYTLDTLDVTDRLSLTAGARLNFARIQSEDLTGFSPDVTGTHYFNKINPVAGL
TYRFFDALNLYGSYSESNRAPTPLELACANPDRPCLLPNSLVADPPLKQVTGRTYEVGFRGQLPNTYDGGIITYKIGAFR
TDLANDILSLATPGNTARAYFVNVPSTQRQGIEVGGEYTADYLRVYANYALVDATFQFNGTLSSPNNPLADDGAIQVRKG
NVVPLVPTHQIKAGFDYFVTPDWQFGLYLQAFSSSYFRGDESNLNRKLPPYYVLNFQTKYQVTKNLEVFGLITNLTNNRY
ATFGTFAEPGAVAGNLRISDPRTTTLAQPFSVYAGIRYAFGADPVPMSPEPIIRKY
>Mature_855_residues
SLRALRSSLVASASVLAGTVLPAAVQAQQSVTLGEISVVSTSPVGAGGGSSSQAQIFNGSGPVPPAGSVGPSAGVRLRGS
EQPLYKIPSTVESVTASDLTIDRASDNLTTTLARRTPGINVSDSQGNNNRVDITYRGFTASPVQGVPQGLAVYQNGVRIN
EAFGDIVNFDLIPPQAIQRIDVVTGNPVFGLNALGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKVSGPWSVYF
TGDGLNDRGWRYESPSTIGRLYGDIGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHRDPRAIFTYPQTTTTEVGTLQLT
GRVDISPTWDLAGNAYFRRFSQTYVDGNDGNFENCSTRSSFRGNLCFEDDGFSPAAGQSQTAFRNQFLILGQQNQRIPFR
SGIPYGTLDTTRTEATGFGGSLQAANRDRIFGLSNSFVVGGSIDAANYGFKSSSTLGVINPNLSITTDPSNPFYGNIPGL
GTPQLRTAGALGIAPSSVNGSNLYMGLYTLDTLDVTDRLSLTAGARLNFARIQSEDLTGFSPDVTGTHYFNKINPVAGLT
YRFFDALNLYGSYSESNRAPTPLELACANPDRPCLLPNSLVADPPLKQVTGRTYEVGFRGQLPNTYDGGIITYKIGAFRT
DLANDILSLATPGNTARAYFVNVPSTQRQGIEVGGEYTADYLRVYANYALVDATFQFNGTLSSPNNPLADDGAIQVRKGN
VVPLVPTHQIKAGFDYFVTPDWQFGLYLQAFSSSYFRGDESNLNRKLPPYYVLNFQTKYQVTKNLEVFGLITNLTNNRYA
TFGTFAEPGAVAGNLRISDPRTTTLAQPFSVYAGIRYAFGADPVPMSPEPIIRKY

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 91938; Mature: 91807

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRALRSSLVASASVLAGTVLPAAVQAQQSVTLGEISVVSTSPVGAGGGSSSQAQIFNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEECC
SGPVPPAGSVGPSAGVRLRGSEQPLYKIPSTVESVTASDLTIDRASDNLTTTLARRTPGI
CCCCCCCCCCCCCCCEEEECCCCCCEECCCHHHHHCCCCEEEECCCCCEEEEEHHCCCCC
NVSDSQGNNNRVDITYRGFTASPVQGVPQGLAVYQNGVRINEAFGDIVNFDLIPPQAIQR
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEHHHCCCEEECCCCHHHHHE
IDVVTGNPVFGLNALGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKVSGPWSVY
EEEEECCCEEEEECCCCEEEEEECCCEEECCCEEEECCCCCCCCCCEEEECCCCCCEEEE
FTGDGLNDRGWRYESPSTIGRLYGDIGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHRD
EECCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC
PRAIFTYPQTTTTEVGTLQLTGRVDISPTWDLAGNAYFRRFSQTYVDGNDGNFENCSTRS
CCEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCC
SFRGNLCFEDDGFSPAAGQSQTAFRNQFLILGQQNQRIPFRSGIPYGTLDTTRTEATGFG
CCCCCEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCC
GSLQAANRDRIFGLSNSFVVGGSIDAANYGFKSSSTLGVINPNLSITTDPSNPFYGNIPG
CCEECCCCCEEEECCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCEECCCC
LGTPQLRTAGALGIAPSSVNGSNLYMGLYTLDTLDVTDRLSLTAGARLNFARIQSEDLTG
CCCCCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCC
FSPDVTGTHYFNKINPVAGLTYRFFDALNLYGSYSESNRAPTPLELACANPDRPCLLPNS
CCCCCCCCHHHCCCCCHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCC
LVADPPLKQVTGRTYEVGFRGQLPNTYDGGIITYKIGAFRTDLANDILSLATPGNTARAY
CCCCCCHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEE
FVNVPSTQRQGIEVGGEYTADYLRVYANYALVDATFQFNGTLSSPNNPLADDGAIQVRKG
EEECCCCCCCCEECCCCHHHHHHHHHHCEEEEEEEEEECCEECCCCCCCCCCCEEEEECC
NVVPLVPTHQIKAGFDYFVTPDWQFGLYLQAFSSSYFRGDESNLNRKLPPYYVLNFQTKY
CEEEECCCHHHCCCCCEEECCCCCCEEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEEEE
QVTKNLEVFGLITNLTNNRYATFGTFAEPGAVAGNLRISDPRTTTLAQPFSVYAGIRYAF
EEECCCEEEEEEEECCCCCEEEECCCCCCCCEECEEEECCCCCCCCCCCHHHHHCEEEEC
GADPVPMSPEPIIRKY
CCCCCCCCCCCHHCCC
>Mature Secondary Structure 
SLRALRSSLVASASVLAGTVLPAAVQAQQSVTLGEISVVSTSPVGAGGGSSSQAQIFNG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEECC
SGPVPPAGSVGPSAGVRLRGSEQPLYKIPSTVESVTASDLTIDRASDNLTTTLARRTPGI
CCCCCCCCCCCCCCCEEEECCCCCCEECCCHHHHHCCCCEEEECCCCCEEEEEHHCCCCC
NVSDSQGNNNRVDITYRGFTASPVQGVPQGLAVYQNGVRINEAFGDIVNFDLIPPQAIQR
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEHHHCCCEEECCCCHHHHHE
IDVVTGNPVFGLNALGGAVNIQMKNGFTWQGTEISAWGGSDARTAGYLEYGKVSGPWSVY
EEEEECCCEEEEECCCCEEEEEECCCEEECCCEEEECCCCCCCCCCEEEECCCCCCEEEE
FTGDGLNDRGWRYESPSTIGRLYGDIGYRSQDSEFHLIGLAARSFYGAAAATPVDFTHRD
EECCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCC
PRAIFTYPQTTTTEVGTLQLTGRVDISPTWDLAGNAYFRRFSQTYVDGNDGNFENCSTRS
CCEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCC
SFRGNLCFEDDGFSPAAGQSQTAFRNQFLILGQQNQRIPFRSGIPYGTLDTTRTEATGFG
CCCCCEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCC
GSLQAANRDRIFGLSNSFVVGGSIDAANYGFKSSSTLGVINPNLSITTDPSNPFYGNIPG
CCEECCCCCEEEECCCCEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCEECCCC
LGTPQLRTAGALGIAPSSVNGSNLYMGLYTLDTLDVTDRLSLTAGARLNFARIQSEDLTG
CCCCCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCC
FSPDVTGTHYFNKINPVAGLTYRFFDALNLYGSYSESNRAPTPLELACANPDRPCLLPNS
CCCCCCCCHHHCCCCCHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCC
LVADPPLKQVTGRTYEVGFRGQLPNTYDGGIITYKIGAFRTDLANDILSLATPGNTARAY
CCCCCCHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEE
FVNVPSTQRQGIEVGGEYTADYLRVYANYALVDATFQFNGTLSSPNNPLADDGAIQVRKG
EEECCCCCCCCEECCCCHHHHHHHHHHCEEEEEEEEEECCEECCCCCCCCCCCEEEEECC
NVVPLVPTHQIKAGFDYFVTPDWQFGLYLQAFSSSYFRGDESNLNRKLPPYYVLNFQTKY
CEEEECCCHHHCCCCCEEECCCCCCEEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEEEE
QVTKNLEVFGLITNLTNNRYATFGTFAEPGAVAGNLRISDPRTTTLAQPFSVYAGIRYAF
EEECCCEEEEEEEECCCCCEEEECCCCCCCCEECEEEECCCCCCCCCCCHHHHHCEEEEC
GADPVPMSPEPIIRKY
CCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA