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The map label for this gene is soxB [H]

Identifier: 170748905

GI number: 170748905

Start: 2653539

End: 2654792

Strand: Reverse

Name: soxB [H]

Synonym: Mrad2831_2487

Alternate gene names: 170748905

Gene position: 2654792-2653539 (Counterclockwise)

Preceding gene: 170748907

Following gene: 170748904

Centisome position: 43.68

GC content: 69.94

Gene sequence:

>1254_bases
ATGCGCCGCTTCTCCCTCACATCGCTGCTCTCGGAATCGCTCCGGGGCCACCAGGGCTGGGGCCGTCAGTGGCGGGATCC
GCAGCCGAAAGCGGCCTACGACGTCGTCATCGTCGGCGGCGGCGGCCACGGCCTGGCGACGGCCTACTACCTCGCGGCCG
TCCACGGCATCACCAACGTCGCCGTGCTGGAGAAGGGCTGGATCGGAGGCGGCAATACCGGCCGCAACACCACGATCATC
CGCTCCAACTACCTCTACGACGAGAGCGCGGCCCTCTACGAGCACGCCCTCAAGCTCTGGGAGGGCTTGGCGCAGGAACT
GAACTACAACGTGATGTTCTCGCAGCGCGGCGTGCTGATGCTCGCGCACAACATCCACGACGTTCAGAGCTTCAAGCGGC
ACGTCTACGCCAACCGGCTCAACGGCATCGACAACGCGTGGCTGTCCAAGGAAGCGTGCAAGGACTTCTGCCCGCCCCTC
GAGATCGGCGGCCACCTCCGCTACCCGGTGCTCGGCGGCGCCCTGCAGCGCCGGGCCGGCACCGCCCGGCACGACGCGGT
CGCCTGGGGCTACGCCCGCGGCGCCGACGCCCGCGGCGTCGACATCATCCAGAACTGCGAGGTGAAGGGCATCCGCCGGG
ACGCCTCGGGGGCGGCGATCGGTGTCGAGACGACCCGCGGCTTCATCGGCGCCGGCCGGATCGGCGTCGTCGCCGCCGGC
CACACCTCGACGGTCATGGCGATGGCCGACGTGCGGATGCCCCTGGAGAGCTACCCGCTCCAGGCCCTGGTCTCGGAGCC
GGTCAAGCCGGTCTTCCCCTGCGTGGTGATGTCGAACGCGGTCCACGCGTACATCTCGCAGTCCGACAAGGGCGAGCTCG
TCATCGGGGCCGGGACGGACCAGTACACCTCCTACAGTCAGCAGGGCGGGCTCCACATCACCACCCACACCCTCGACGCC
ATCTGCGAGCTCTTCCCGCAATTCACCCGGATGCGGATGCTGCGCTCCTGGGGCGGCATCGTCGACGTCACGCCCGACCG
CTCGCCGATCATCGGGAAGACGCCGGTGAGGAACCTGTTCGTCAATTGCGGGTGGGGCACGGGCGGCTTCAAGGCCACGC
CGGGCTCGGGCCACGTCTTCGCCCACACCCTCGCGACCGGCGCGCCCCACGCGATCAACGCGCCCTTCACCCTCGACCGC
TTCCGCACCGGGCGGCTCATCGACGAGGCCGCCGCCGCGGCCGTCGCGCACTGA

Upstream 100 bases:

>100_bases
CGGCCGGGCTCGGCGTCGCAAATCTCAAACTCGCGGTCGCCGTCGAGAAAGCCGGCCCCGGTCGTCGCGCCGATGATCGA
TCATCCAAGGGGGCTCACCG

Downstream 100 bases:

>100_bases
CCGGCGACCACCCGTCCCAGCGAGGAGACGCCCGATGCTGCTGATCGCCTGTCCGTATTGCGGGAACCGACCCGAGACCG
AGTTCCGCTGCGGCGGCCAG

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRRFSLTSLLSESLRGHQGWGRQWRDPQPKAAYDVVIVGGGGHGLATAYYLAAVHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYDESAALYEHALKLWEGLAQELNYNVMFSQRGVLMLAHNIHDVQSFKRHVYANRLNGIDNAWLSKEACKDFCPPL
EIGGHLRYPVLGGALQRRAGTARHDAVAWGYARGADARGVDIIQNCEVKGIRRDASGAAIGVETTRGFIGAGRIGVVAAG
HTSTVMAMADVRMPLESYPLQALVSEPVKPVFPCVVMSNAVHAYISQSDKGELVIGAGTDQYTSYSQQGGLHITTHTLDA
ICELFPQFTRMRMLRSWGGIVDVTPDRSPIIGKTPVRNLFVNCGWGTGGFKATPGSGHVFAHTLATGAPHAINAPFTLDR
FRTGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MRRFSLTSLLSESLRGHQGWGRQWRDPQPKAAYDVVIVGGGGHGLATAYYLAAVHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYDESAALYEHALKLWEGLAQELNYNVMFSQRGVLMLAHNIHDVQSFKRHVYANRLNGIDNAWLSKEACKDFCPPL
EIGGHLRYPVLGGALQRRAGTARHDAVAWGYARGADARGVDIIQNCEVKGIRRDASGAAIGVETTRGFIGAGRIGVVAAG
HTSTVMAMADVRMPLESYPLQALVSEPVKPVFPCVVMSNAVHAYISQSDKGELVIGAGTDQYTSYSQQGGLHITTHTLDA
ICELFPQFTRMRMLRSWGGIVDVTPDRSPIIGKTPVRNLFVNCGWGTGGFKATPGSGHVFAHTLATGAPHAINAPFTLDR
FRTGRLIDEAAAAAVAH
>Mature_417_residues
MRRFSLTSLLSESLRGHQGWGRQWRDPQPKAAYDVVIVGGGGHGLATAYYLAAVHGITNVAVLEKGWIGGGNTGRNTTII
RSNYLYDESAALYEHALKLWEGLAQELNYNVMFSQRGVLMLAHNIHDVQSFKRHVYANRLNGIDNAWLSKEACKDFCPPL
EIGGHLRYPVLGGALQRRAGTARHDAVAWGYARGADARGVDIIQNCEVKGIRRDASGAAIGVETTRGFIGAGRIGVVAAG
HTSTVMAMADVRMPLESYPLQALVSEPVKPVFPCVVMSNAVHAYISQSDKGELVIGAGTDQYTSYSQQGGLHITTHTLDA
ICELFPQFTRMRMLRSWGGIVDVTPDRSPIIGKTPVRNLFVNCGWGTGGFKATPGSGHVFAHTLATGAPHAINAPFTLDR
FRTGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=394, Percent_Identity=26.3959390862944, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI21361378, Length=394, Percent_Identity=26.3959390862944, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI24797151, Length=405, Percent_Identity=23.4567901234568, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45014; Mature: 45014

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFSLTSLLSESLRGHQGWGRQWRDPQPKAAYDVVIVGGGGHGLATAYYLAAVHGITNV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHE
AVLEKGWIGGGNTGRNTTIIRSNYLYDESAALYEHALKLWEGLAQELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
LAHNIHDVQSFKRHVYANRLNGIDNAWLSKEACKDFCPPLEIGGHLRYPVLGGALQRRAG
EECCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHCCCCCCCCCEEECCHHHHHHHHHCC
TARHDAVAWGYARGADARGVDIIQNCEVKGIRRDASGAAIGVETTRGFIGAGRIGVVAAG
CCHHHHEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCEEEEECCCCEECCCCEEEEECC
HTSTVMAMADVRMPLESYPLQALVSEPVKPVFPCVVMSNAVHAYISQSDKGELVIGAGTD
CCCEEEEHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
QYTSYSQQGGLHITTHTLDAICELFPQFTRMRMLRSWGGIVDVTPDRSPIIGKTPVRNLF
HHCCHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEE
VNCGWGTGGFKATPGSGHVFAHTLATGAPHAINAPFTLDRFRTGRLIDEAAAAAVAH
EECCCCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRRFSLTSLLSESLRGHQGWGRQWRDPQPKAAYDVVIVGGGGHGLATAYYLAAVHGITNV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHE
AVLEKGWIGGGNTGRNTTIIRSNYLYDESAALYEHALKLWEGLAQELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
LAHNIHDVQSFKRHVYANRLNGIDNAWLSKEACKDFCPPLEIGGHLRYPVLGGALQRRAG
EECCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHCCCCCCCCCEEECCHHHHHHHHHCC
TARHDAVAWGYARGADARGVDIIQNCEVKGIRRDASGAAIGVETTRGFIGAGRIGVVAAG
CCHHHHEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCEEEEECCCCEECCCCEEEEECC
HTSTVMAMADVRMPLESYPLQALVSEPVKPVFPCVVMSNAVHAYISQSDKGELVIGAGTD
CCCEEEEHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
QYTSYSQQGGLHITTHTLDAICELFPQFTRMRMLRSWGGIVDVTPDRSPIIGKTPVRNLF
HHCCHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEE
VNCGWGTGGFKATPGSGHVFAHTLATGAPHAINAPFTLDRFRTGRLIDEAAAAAVAH
EECCCCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]