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The map label for this gene is ydcN [H]

Identifier: 170748375

GI number: 170748375

Start: 2087940

End: 2088566

Strand: Reverse

Name: ydcN [H]

Synonym: Mrad2831_1957

Alternate gene names: 170748375

Gene position: 2088566-2087940 (Counterclockwise)

Preceding gene: 170748376

Following gene: 170748368

Centisome position: 34.36

GC content: 70.49

Gene sequence:

>627_bases
ATGCAGGATCAGGCGGAACGGCCCGACCGGGCGCGCGGGCGCGACCTGCTGACCGGGGCGCAGGCGCTCTCCGGCCAGCT
CGGCAAGACCATCCAGCGGCTGCGCAAGGCCTACAACCTCTCGCTCTCGGAACTCGCCGAGCAGTCCGGCGTGGCCAAGT
CGATCATCAGCCAGATCGAGCGCAACGAGACCAACCCGACGCTGGCGACGATCTGGCGCCTGTCCCAGGCCCTCGACGTG
TCGATCGAGCGGGTGCTGGCGGCCGGCGACGAGGAGCCGTTCATCGAGAAGACCTCCCGGGCCGACACGCCGATCCTCGT
CTCCGAGGACGGGAAGGTGCGGCTGGCGATCATCGGCTGGCTCAAGACGATCGAGTGGCTGCAATGGTACGAGGTCACGG
CCGATCCGGGCGGCGTCCTCGACTCGGACCCGCACCAGCGCGGCTCGGTGGAATCCCTCTCGGTCACCGAGGGCGCGTTC
GAGGTCGAGATCGGCGGCGTCGTGCAGCGGGCGCGGGCCGGCGAGACCCTGCGCTACCGCTGTGACCGGCCCCACCTCGT
GCGCTGCACGGACGGCCCGGCCCGGGCCACCATGGTGGTGATCATGAAGGCCGCCGTGATGGAGTGA

Upstream 100 bases:

>100_bases
ACTGCGCGCGCCGGGCGCCGCCTTGCAACCGGGCGTCGATTGCGTTTGAAGAAGCGCACGATCGTTCGGATAACGGAACG
GTGCAGGCGGATCGGGGACG

Downstream 100 bases:

>100_bases
GGCGGCCCGGCCGAGCCCCGGTCAAGCCCCCGGTCAGCGCTCCGGACTGGCGGCGGCGCCCGGCGCGAGGGCGCGCATGC
GGTAGTCGCGGGGGCTCAGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MQDQAERPDRARGRDLLTGAQALSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGWLKTIEWLQWYEVTADPGGVLDSDPHQRGSVESLSVTEGAF
EVEIGGVVQRARAGETLRYRCDRPHLVRCTDGPARATMVVIMKAAVME

Sequences:

>Translated_208_residues
MQDQAERPDRARGRDLLTGAQALSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGWLKTIEWLQWYEVTADPGGVLDSDPHQRGSVESLSVTEGAF
EVEIGGVVQRARAGETLRYRCDRPHLVRCTDGPARATMVVIMKAAVME
>Mature_208_residues
MQDQAERPDRARGRDLLTGAQALSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGWLKTIEWLQWYEVTADPGGVLDSDPHQRGSVESLSVTEGAF
EVEIGGVVQRARAGETLRYRCDRPHLVRCTDGPARATMVVIMKAAVME

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=162, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22910; Mature: 22910

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDQAERPDRARGRDLLTGAQALSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIE
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RNETNPTLATIWRLSQALDVSIERVLAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGW
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCEEEEHHHH
LKTIEWLQWYEVTADPGGVLDSDPHQRGSVESLSVTEGAFEVEIGGVVQRARAGETLRYR
HHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHCCCCEEEE
CDRPHLVRCTDGPARATMVVIMKAAVME
CCCCCEEEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQDQAERPDRARGRDLLTGAQALSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIE
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RNETNPTLATIWRLSQALDVSIERVLAAGDEEPFIEKTSRADTPILVSEDGKVRLAIIGW
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECCCCEEEEHHHH
LKTIEWLQWYEVTADPGGVLDSDPHQRGSVESLSVTEGAFEVEIGGVVQRARAGETLRYR
HHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHCCCCEEEE
CDRPHLVRCTDGPARATMVVIMKAAVME
CCCCCEEEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]