Click here to switch to the map view.

The map label for this gene is ybjK [H]

Identifier: 170748186

GI number: 170748186

Start: 1881644

End: 1882189

Strand: Reverse

Name: ybjK [H]

Synonym: Mrad2831_1768

Alternate gene names: 170748186

Gene position: 1882189-1881644 (Counterclockwise)

Preceding gene: 170748188

Following gene: 170748185

Centisome position: 30.97

GC content: 73.81

Gene sequence:

>546_bases
TTGCCCACCGCCCAGCGCCGTTTCGACCCGGATCGCCGGGCGCGCATCGTCCGGGCGACCCTCGACGTCGTCGCCGAGCA
CGGCGTCGCCGGCACGACCCACCGCCGGGTCGCGGCGGCGGCCGACGTGCCGCTCGGCTCCATGACCTACCATTTCGACA
GCCTCGACGCGCTGCTGACGGAAGCGTTCACCGGGCTGGCCGACACGGTCTCGGCGCGGTTCGCCGACCGGCTCGCCGCG
GCCGCGACCGTCGACGAGGCCTGCGAGGCCGTGGTCGACCTGATCGTGAGCGACATCTGGGCGAGCCCGCGCACGATGCT
GCTGAGCTACGAGCTCTACGCCTTCGCGGCCCGGAACCCGCCGCTGCGCCGGGTGATGCAGGACTGGATGGCCAAGAGCC
GCGCGGCCCTGGGGCGGCACTTCGCGCCGGAGACCGCCAAGGCCCTCGACGCGATGATCGAGGGCCTGACGATCCATCGC
TCGGTCGACCCGCAGCCGGCGGATCGCGCGCAGGTGCGGGCGATCGTCGAGCGGCTGGTGCGGTAG

Upstream 100 bases:

>100_bases
CGGCCCGACACCGCGGGCCCCAGCTATGCGTACAGATGTACACATCGAGGCCGCGCGCGTCACGGCCCGGCTGCCCTGAA
CCGGATCCGAGGAGGTCTGC

Downstream 100 bases:

>100_bases
GTCTGCTCCCGTCCGCGCCGCGACACGCTCCGGCGCGCCGGGCCCTCAAGCGATCGTGATCGCGGGGTGACAGGCGCCGA
ATGCCGCACGGTGCCGGCAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPTAQRRFDPDRRARIVRATLDVVAEHGVAGTTHRRVAAAADVPLGSMTYHFDSLDALLTEAFTGLADTVSARFADRLAA
AATVDEACEAVVDLIVSDIWASPRTMLLSYELYAFAARNPPLRRVMQDWMAKSRAALGRHFAPETAKALDAMIEGLTIHR
SVDPQPADRAQVRAIVERLVR

Sequences:

>Translated_181_residues
MPTAQRRFDPDRRARIVRATLDVVAEHGVAGTTHRRVAAAADVPLGSMTYHFDSLDALLTEAFTGLADTVSARFADRLAA
AATVDEACEAVVDLIVSDIWASPRTMLLSYELYAFAARNPPLRRVMQDWMAKSRAALGRHFAPETAKALDAMIEGLTIHR
SVDPQPADRAQVRAIVERLVR
>Mature_180_residues
PTAQRRFDPDRRARIVRATLDVVAEHGVAGTTHRRVAAAADVPLGSMTYHFDSLDALLTEAFTGLADTVSARFADRLAAA
ATVDEACEAVVDLIVSDIWASPRTMLLSYELYAFAARNPPLRRVMQDWMAKSRAALGRHFAPETAKALDAMIEGLTIHRS
VDPQPADRAQVRAIVERLVR

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=171, Percent_Identity=43.859649122807, Blast_Score=162, Evalue=1e-41,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19880; Mature: 19749

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTAQRRFDPDRRARIVRATLDVVAEHGVAGTTHRRVAAAADVPLGSMTYHFDSLDALLT
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EAFTGLADTVSARFADRLAAAATVDEACEAVVDLIVSDIWASPRTMLLSYELYAFAARNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
PLRRVMQDWMAKSRAALGRHFAPETAKALDAMIEGLTIHRSVDPQPADRAQVRAIVERLV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHC
R
C
>Mature Secondary Structure 
PTAQRRFDPDRRARIVRATLDVVAEHGVAGTTHRRVAAAADVPLGSMTYHFDSLDALLT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EAFTGLADTVSARFADRLAAAATVDEACEAVVDLIVSDIWASPRTMLLSYELYAFAARNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
PLRRVMQDWMAKSRAALGRHFAPETAKALDAMIEGLTIHRSVDPQPADRAQVRAIVERLV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]