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The map label for this gene is rhaS [C]

Identifier: 170748070

GI number: 170748070

Start: 1763634

End: 1764617

Strand: Reverse

Name: rhaS [C]

Synonym: Mrad2831_1652

Alternate gene names: 170748070

Gene position: 1764617-1763634 (Counterclockwise)

Preceding gene: 170748075

Following gene: 170748062

Centisome position: 29.03

GC content: 77.44

Gene sequence:

>984_bases
ATGCCAAAGAGCCCTCGTTTCTCGCCAGACGCGCCGCGCCCCGTCGAGGTGCTGGCCTTCCCGTCGGTGCAGCTCCTCGA
CGTGGCCGGGCCGCTCCAGGTCTTCGCCACCGCCAACGAGCACGGCGGCGCCGGGATGCCCTACGCGCCGCGGGTGATCG
CGGCCGGCGACCCGGGGCTCACCGCCTCGGCGGGGCTGCGGCTGGTGGCCGACCCGCTGCCGGATCCCCACGCGCCGGTG
GACACGCTGGTGATCGCGGGCGGCCCCGGCGTCGTCGCGGCCTGCGACGACGCCGCCCTGGTGGCCTGGGTGCGGACCCG
GGCGGGTCGGGCCCGCCGGGTCGCCTCGGTCTGCACCGGCGCGTTCCTGCTCGGGGCGGCGGGGCTCCTCGACGGGCGGC
GGGCCGTGACCCACTGGAAGCATTGCGGCGCGCTCGCCGCGCGCTACCGGCGCGCCCGGATCGAGCCCGACCCGATCTTC
GTGCGCGACGGCCCGGTCTGGTCCTCGGCGGGGGTCACGGCCGGTATCGACCTGGCCCTGGCGCTGGTCGAGGAGGATCT
CGGCCGCGCGACCGCCCTGGCGGTGGCGCGCCACCTCGTGATGTTCCTCAAGCGCCCCGGCGGGCAGGCGCAGTTCAGCG
CGGCGCTGGCGCTGCAGGCGGGCGAGGAGCGGTTCGGGCGGCTCCACGCCTACATCGCCGACAACCTGTCCGGCGACCTG
TCGCTGCCGGCGCTCGCCGCGGCGGCCGGGATGAGTGCGCGCAGCCTCAGCCGGCACTATCGCGAGGCGACCGGCCTGAC
CCCGGCCAGGGCCGTGGAGCGCCTGCGGGTGGAGGCGGCCCGGCGCGCGCTCGCCGAGACGGCGCAGCCGATCAAGCGCG
TCGCCCGGACCTGCGGCTTCGGCTCCGAGGAGACGATGCGGCGCAGCTTCCTGCGGCACGTCGCGGCGACGCCGCAGGAG
TACCGGGCGCGGTTCGGCGGGTGA

Upstream 100 bases:

>100_bases
CGAACAGGAGCGAACCGATCTGCAGGTGGGTGTCGGGCGGGATCATGCCGGAGCCTCCGTGGTGGACAGGACGACCCTAC
CGCGTCAGGATCTGGCCGAA

Downstream 100 bases:

>100_bases
GGGTGGACTAGAGCCGTATCCGACCATGTTGCAACGGTCGGGAAGGAGGGCGAGCCCGGTCTCGCCAACCGCGCCAGGCC
CCCTCTCCCGTGCGGGAGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MPKSPRFSPDAPRPVEVLAFPSVQLLDVAGPLQVFATANEHGGAGMPYAPRVIAAGDPGLTASAGLRLVADPLPDPHAPV
DTLVIAGGPGVVAACDDAALVAWVRTRAGRARRVASVCTGAFLLGAAGLLDGRRAVTHWKHCGALAARYRRARIEPDPIF
VRDGPVWSSAGVTAGIDLALALVEEDLGRATALAVARHLVMFLKRPGGQAQFSAALALQAGEERFGRLHAYIADNLSGDL
SLPALAAAAGMSARSLSRHYREATGLTPARAVERLRVEAARRALAETAQPIKRVARTCGFGSEETMRRSFLRHVAATPQE
YRARFGG

Sequences:

>Translated_327_residues
MPKSPRFSPDAPRPVEVLAFPSVQLLDVAGPLQVFATANEHGGAGMPYAPRVIAAGDPGLTASAGLRLVADPLPDPHAPV
DTLVIAGGPGVVAACDDAALVAWVRTRAGRARRVASVCTGAFLLGAAGLLDGRRAVTHWKHCGALAARYRRARIEPDPIF
VRDGPVWSSAGVTAGIDLALALVEEDLGRATALAVARHLVMFLKRPGGQAQFSAALALQAGEERFGRLHAYIADNLSGDL
SLPALAAAAGMSARSLSRHYREATGLTPARAVERLRVEAARRALAETAQPIKRVARTCGFGSEETMRRSFLRHVAATPQE
YRARFGG
>Mature_326_residues
PKSPRFSPDAPRPVEVLAFPSVQLLDVAGPLQVFATANEHGGAGMPYAPRVIAAGDPGLTASAGLRLVADPLPDPHAPVD
TLVIAGGPGVVAACDDAALVAWVRTRAGRARRVASVCTGAFLLGAAGLLDGRRAVTHWKHCGALAARYRRARIEPDPIFV
RDGPVWSSAGVTAGIDLALALVEEDLGRATALAVARHLVMFLKRPGGQAQFSAALALQAGEERFGRLHAYIADNLSGDLS
LPALAAAAGMSARSLSRHYREATGLTPARAVERLRVEAARRALAETAQPIKRVARTCGFGSEETMRRSFLRHVAATPQEY
RARFGG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 34391; Mature: 34260

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSPRFSPDAPRPVEVLAFPSVQLLDVAGPLQVFATANEHGGAGMPYAPRVIAAGDPGL
CCCCCCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC
TASAGLRLVADPLPDPHAPVDTLVIAGGPGVVAACDDAALVAWVRTRAGRARRVASVCTG
CHHCCCEEEECCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHH
AFLLGAAGLLDGRRAVTHWKHCGALAARYRRARIEPDPIFVRDGPVWSSAGVTAGIDLAL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
ALVEEDLGRATALAVARHLVMFLKRPGGQAQFSAALALQAGEERFGRLHAYIADNLSGDL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
SLPALAAAAGMSARSLSRHYREATGLTPARAVERLRVEAARRALAETAQPIKRVARTCGF
CCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GSEETMRRSFLRHVAATPQEYRARFGG
CCHHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure 
PKSPRFSPDAPRPVEVLAFPSVQLLDVAGPLQVFATANEHGGAGMPYAPRVIAAGDPGL
CCCCCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC
TASAGLRLVADPLPDPHAPVDTLVIAGGPGVVAACDDAALVAWVRTRAGRARRVASVCTG
CHHCCCEEEECCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHH
AFLLGAAGLLDGRRAVTHWKHCGALAARYRRARIEPDPIFVRDGPVWSSAGVTAGIDLAL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
ALVEEDLGRATALAVARHLVMFLKRPGGQAQFSAALALQAGEERFGRLHAYIADNLSGDL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
SLPALAAAAGMSARSLSRHYREATGLTPARAVERLRVEAARRALAETAQPIKRVARTCGF
CCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GSEETMRRSFLRHVAATPQEYRARFGG
CCHHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]