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The map label for this gene is rpoE [C]

Identifier: 170747314

GI number: 170747314

Start: 924935

End: 925606

Strand: Reverse

Name: rpoE [C]

Synonym: Mrad2831_0881

Alternate gene names: 170747314

Gene position: 925606-924935 (Counterclockwise)

Preceding gene: 170747315

Following gene: 170747313

Centisome position: 15.23

GC content: 77.08

Gene sequence:

>672_bases
ATGATGCTCGCCGTTCCGGGCGGGATGCCCGCGCGCGGCTGGGCGCTGGCGTCGGGATCGGACCGTGGGGTAGATACGCC
GCGTGCCGGGGGACGGAACGACGGCGGAGCCCGGATGGCGCTCGAACAGGAACTGGCGACCCTGATGACGGCGGCCCAGG
GCGGCGACGCGGCCGCCTATCGCGCGCTGCTGAAGGCCTGTCTGCCCGTGGTCTCGGCGATCGCGCGGGCGCAGGGCGTG
CGCGGCGAGGCGGTGGACGACGTCGTGCAGGACGCGCTGATGACCGTCCACCGGGCCCGGGCGAGCTACGATCCCGCCCG
GCCGTTCCTGCCCTGGCTGCGCGCCATCACCCAGCGGCGCGCCATCGACCGGCTGCGCCGCGCCGGGCGGCGCCCGCAGG
AGGTCAACGACCCGCTGGCCTACGAGGCGGAGGTCGATCCGGGGCCGGCCCCCGGCCAGGGGCTGGAGGCGCGGGACCGG
GCCGCCGCGCTGGCCAGGGCGGTGGCGGCCCTGCCCGACGGCCAGCGGCAGGCGGTGGAGCACCTGGGCCTGCGCGAGCT
GTCGCTCGACGAGACCGCGGCCCTCACCGGCCGCAGCAAGGGGGCCCTCAAGGTGAACCTGCACCGGGCGCTGAAGGCGC
TCCGGGCCAGCCTGACGCAGGAGCGGGAGTGA

Upstream 100 bases:

>100_bases
AGTCCGATGACGGGCGCATCCTCGGCGCCGCGCGCCTCGCCCCTTCCCCCGCCGCTTCCCCCGCTCCTTCCCCCGCCGGG
GCGGTCCGGGAGGCCGTGCG

Downstream 100 bases:

>100_bases
TGCCCGGAGAGGGGAGCAACTGGGCCGGCGGCGACCTGTCCCGTCACGAGCGGCTCGTCGAGGAACTCGCGGGCGGGCTC
GAACCCGTGCGGCCGCTGCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor NccH; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MMLAVPGGMPARGWALASGSDRGVDTPRAGGRNDGGARMALEQELATLMTAAQGGDAAAYRALLKACLPVVSAIARAQGV
RGEAVDDVVQDALMTVHRARASYDPARPFLPWLRAITQRRAIDRLRRAGRRPQEVNDPLAYEAEVDPGPAPGQGLEARDR
AAALARAVAALPDGQRQAVEHLGLRELSLDETAALTGRSKGALKVNLHRALKALRASLTQERE

Sequences:

>Translated_223_residues
MMLAVPGGMPARGWALASGSDRGVDTPRAGGRNDGGARMALEQELATLMTAAQGGDAAAYRALLKACLPVVSAIARAQGV
RGEAVDDVVQDALMTVHRARASYDPARPFLPWLRAITQRRAIDRLRRAGRRPQEVNDPLAYEAEVDPGPAPGQGLEARDR
AAALARAVAALPDGQRQAVEHLGLRELSLDETAALTGRSKGALKVNLHRALKALRASLTQERE
>Mature_223_residues
MMLAVPGGMPARGWALASGSDRGVDTPRAGGRNDGGARMALEQELATLMTAAQGGDAAAYRALLKACLPVVSAIARAQGV
RGEAVDDVVQDALMTVHRARASYDPARPFLPWLRAITQRRAIDRLRRAGRRPQEVNDPLAYEAEVDPGPAPGQGLEARDR
AAALARAVAALPDGQRQAVEHLGLRELSLDETAALTGRSKGALKVNLHRALKALRASLTQERE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23675; Mature: 23675

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLAVPGGMPARGWALASGSDRGVDTPRAGGRNDGGARMALEQELATLMTAAQGGDAAAY
CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
RALLKACLPVVSAIARAQGVRGEAVDDVVQDALMTVHRARASYDPARPFLPWLRAITQRR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AIDRLRRAGRRPQEVNDPLAYEAEVDPGPAPGQGLEARDRAAALARAVAALPDGQRQAVE
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
HLGLRELSLDETAALTGRSKGALKVNLHRALKALRASLTQERE
HCCCHHCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMLAVPGGMPARGWALASGSDRGVDTPRAGGRNDGGARMALEQELATLMTAAQGGDAAAY
CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
RALLKACLPVVSAIARAQGVRGEAVDDVVQDALMTVHRARASYDPARPFLPWLRAITQRR
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AIDRLRRAGRRPQEVNDPLAYEAEVDPGPAPGQGLEARDRAAALARAVAALPDGQRQAVE
HHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
HLGLRELSLDETAALTGRSKGALKVNLHRALKALRASLTQERE
HCCCHHCCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA