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The map label for this gene is deoB

Identifier: 170747249

GI number: 170747249

Start: 859257

End: 860477

Strand: Reverse

Name: deoB

Synonym: Mrad2831_0816

Alternate gene names: 170747249

Gene position: 860477-859257 (Counterclockwise)

Preceding gene: 170747250

Following gene: 170747248

Centisome position: 14.16

GC content: 75.68

Gene sequence:

>1221_bases
GTGGCGCGCGCCCTCATCATCGTCCTCGATTCCGTGGGCGTCGGCGGGGCCCCGGACGCGGACCGCTACGGCGATACCGG
GTCCGACACGCTGGGGCACATCGCCGAGCGCTGCGCGGAGGGCCGCGGCGACCGGGCGGGGCTGCGCGCGGGTCCCCTGC
GCCTGCCCCACCTCGCCGAACTCGGGCTCGGCCTGGCGGCCGCCGGGGCCTCGGGCCGCATCCCGCCGAACCTCACCCCG
GTCGGCCCGCCGCGCGGCGTCTACGGCCACGCGGTGGAGACGGCCGCCGGCAAGGACACGCCCTCCGGTCACTGGGAGAT
TGCCGGCCTGCCCCTGCCCGAGCCCTGGGGGCATTTTCCCGATACGCGGCCGGCCTTCCCGCCGGAGCTGACCCGCGCGC
TCGTCGCCGAGGGCGACCTCCCGGGCATCCTCGGCGATTGCCACGCGCCGGGCGTCGCGATCATCGACGCGCTGGGCGCC
GAGCACCTCCGGACCGGCCGGCCGATCTGCTACACCTCGGCCGACAGCGTGTTCCAGATCGCCGCCCACGAGGAGGCGTT
CGGGCTGGAGCGGCTCTACGACCTGTGCCGCGTGGCGCGCCGCCTGTGCGACCGCTACCGCGTCTGCCGGGTGATCGCCC
GGCCCTTCGTGGGCTCGCCGGAGGCGGGCTTTCGCCGGACCGGCAACCGCAGGGATCTCGCCGTCGCCCCGCCCGGGCGC
ACGCTGCTCGACCGCGCCGAGGCGGCCGGTCGCGCGGTCGTGAGCGTCGGCAAGATCGGCGACATCTTCGCCCACCGCGC
CACAGGCCGCGAGATCAAGCCGGGCCCGAACGCGGCCTGCCTGACGGCGGGGCTCGACGCGCTGGCGACGCTGCCGCAGG
GAGGCCTGATCTTCGTCAACCTCGTCGATTTCGACACGGAGCACGGCCACCGCCGCGACGTGCCGGGCTACGCCGCGGAG
CTGGAGGCGTTCGACGCCCGGATCCCCGAGATCCTGGCGGCGCTGGCACCGGGCGACCTCGCGGTCATCACGGCCGACCA
CGGCAACGACCCGACCTGGACCGGTACCGATCACACCCGCGAACAGGTCCCGGTCTTGGCCTTCGGCCCCGGCGTGGCCG
CCCGACCGATCGGGCGGCGCGAGACCTTCGCGGATATCGGCGCCACCGTGGCGGCCCATCTCGGCCTCGCCTGGGACGGG
GCCGGAACACCGTTCCTGTAG

Upstream 100 bases:

>100_bases
CGATCTTCGCGAATCCCCGGACCCCCTACACCCGCGCCCTGTTCAAGGCCGCCTTCGCCCTCGAGAGCGACGCGGCCGCC
GAGCTGGAGTCCGCCTGACC

Downstream 100 bases:

>100_bases
GGAGGACACGACGTGCGGGACGACGACGACCGGCCGCGCAAGGCCGTTGCCCACGAGATCGGGCAGCCCCTCGACACGCT
CTCGCTCGGGGATCTCGACG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MARALIIVLDSVGVGGAPDADRYGDTGSDTLGHIAERCAEGRGDRAGLRAGPLRLPHLAELGLGLAAAGASGRIPPNLTP
VGPPRGVYGHAVETAAGKDTPSGHWEIAGLPLPEPWGHFPDTRPAFPPELTRALVAEGDLPGILGDCHAPGVAIIDALGA
EHLRTGRPICYTSADSVFQIAAHEEAFGLERLYDLCRVARRLCDRYRVCRVIARPFVGSPEAGFRRTGNRRDLAVAPPGR
TLLDRAEAAGRAVVSVGKIGDIFAHRATGREIKPGPNAACLTAGLDALATLPQGGLIFVNLVDFDTEHGHRRDVPGYAAE
LEAFDARIPEILAALAPGDLAVITADHGNDPTWTGTDHTREQVPVLAFGPGVAARPIGRRETFADIGATVAAHLGLAWDG
AGTPFL

Sequences:

>Translated_406_residues
MARALIIVLDSVGVGGAPDADRYGDTGSDTLGHIAERCAEGRGDRAGLRAGPLRLPHLAELGLGLAAAGASGRIPPNLTP
VGPPRGVYGHAVETAAGKDTPSGHWEIAGLPLPEPWGHFPDTRPAFPPELTRALVAEGDLPGILGDCHAPGVAIIDALGA
EHLRTGRPICYTSADSVFQIAAHEEAFGLERLYDLCRVARRLCDRYRVCRVIARPFVGSPEAGFRRTGNRRDLAVAPPGR
TLLDRAEAAGRAVVSVGKIGDIFAHRATGREIKPGPNAACLTAGLDALATLPQGGLIFVNLVDFDTEHGHRRDVPGYAAE
LEAFDARIPEILAALAPGDLAVITADHGNDPTWTGTDHTREQVPVLAFGPGVAARPIGRRETFADIGATVAAHLGLAWDG
AGTPFL
>Mature_405_residues
ARALIIVLDSVGVGGAPDADRYGDTGSDTLGHIAERCAEGRGDRAGLRAGPLRLPHLAELGLGLAAAGASGRIPPNLTPV
GPPRGVYGHAVETAAGKDTPSGHWEIAGLPLPEPWGHFPDTRPAFPPELTRALVAEGDLPGILGDCHAPGVAIIDALGAE
HLRTGRPICYTSADSVFQIAAHEEAFGLERLYDLCRVARRLCDRYRVCRVIARPFVGSPEAGFRRTGNRRDLAVAPPGRT
LLDRAEAAGRAVVSVGKIGDIFAHRATGREIKPGPNAACLTAGLDALATLPQGGLIFVNLVDFDTEHGHRRDVPGYAAEL
EAFDARIPEILAALAPGDLAVITADHGNDPTWTGTDHTREQVPVLAFGPGVAARPIGRRETFADIGATVAAHLGLAWDGA
GTPFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=401, Percent_Identity=52.3690773067332, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1789781, Length=421, Percent_Identity=29.4536817102138, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_METRJ (B1LYJ9)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001753509.1
- ProteinModelPortal:   B1LYJ9
- SMR:   B1LYJ9
- GeneID:   6136832
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_0816
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- ProtClustDB:   CLSK2330879
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 42447; Mature: 42315

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARALIIVLDSVGVGGAPDADRYGDTGSDTLGHIAERCAEGRGDRAGLRAGPLRLPHLAE
CCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LGLGLAAAGASGRIPPNLTPVGPPRGVYGHAVETAAGKDTPSGHWEIAGLPLPEPWGHFP
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCC
DTRPAFPPELTRALVAEGDLPGILGDCHAPGVAIIDALGAEHLRTGRPICYTSADSVFQI
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCCCEEEECCCCEEEE
AAHEEAFGLERLYDLCRVARRLCDRYRVCRVIARPFVGSPEAGFRRTGNRRDLAVAPPGR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEECCCCH
TLLDRAEAAGRAVVSVGKIGDIFAHRATGREIKPGPNAACLTAGLDALATLPQGGLIFVN
HHHHHHHHCCHHEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
LVDFDTEHGHRRDVPGYAAELEAFDARIPEILAALAPGDLAVITADHGNDPTWTGTDHTR
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
EQVPVLAFGPGVAARPIGRRETFADIGATVAAHLGLAWDGAGTPFL
HHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCC
>Mature Secondary Structure 
ARALIIVLDSVGVGGAPDADRYGDTGSDTLGHIAERCAEGRGDRAGLRAGPLRLPHLAE
CCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LGLGLAAAGASGRIPPNLTPVGPPRGVYGHAVETAAGKDTPSGHWEIAGLPLPEPWGHFP
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCCCCC
DTRPAFPPELTRALVAEGDLPGILGDCHAPGVAIIDALGAEHLRTGRPICYTSADSVFQI
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCCCEEEECCCCEEEE
AAHEEAFGLERLYDLCRVARRLCDRYRVCRVIARPFVGSPEAGFRRTGNRRDLAVAPPGR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEECCCCH
TLLDRAEAAGRAVVSVGKIGDIFAHRATGREIKPGPNAACLTAGLDALATLPQGGLIFVN
HHHHHHHHCCHHEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
LVDFDTEHGHRRDVPGYAAELEAFDARIPEILAALAPGDLAVITADHGNDPTWTGTDHTR
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
EQVPVLAFGPGVAARPIGRRETFADIGATVAAHLGLAWDGAGTPFL
HHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA