| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is 170747191
Identifier: 170747191
GI number: 170747191
Start: 799705
End: 800919
Strand: Reverse
Name: 170747191
Synonym: Mrad2831_0757
Alternate gene names: NA
Gene position: 800919-799705 (Counterclockwise)
Preceding gene: 170747196
Following gene: 170747188
Centisome position: 13.18
GC content: 71.52
Gene sequence:
>1215_bases ATGGCGTGTGTCGAGACGGCGGAGAGCGGCGGAGACCTCCGCGCCGCGGCCGAGGAGGCCGGACTCGTCTACGTCGACGA CGGCCGGCCCGGGCTGACCCGCCGCCGCAGCGGCACTGGCTTCCGCTACCTCGACGCGAAGGGCGCGCCGGTGCGCGACA AGGCGGTGCTGGCCCGCATCCGCAGCCTCGCGATCCCGCCGGCCTACACGGATGTCTGGATCTGTCCCCGCCGCAACGGC CACATCCAGGCGACGGGCCGCGACGCCAAGGGGCGCAAGCAGTACCGCTACCACCCGGACTTCCGGCAGGCGCGGGAGGC CAACAAGTTCTCGCGGATCATGGCCTTCGCGGACGCGCTGCCCGGGATCCGCCGACGCGTCGACGCCGACATGAAGCGGC CGGGCCTCTCCCGCGACAAGGTGCTGGCCACCGTGGTCCACCTGCTCGAGACCACGCTGATCCGCGTCGGCAACGACGAC TACGCGCGGACCAACAAGAGCTACGGCCTCACGACCCTGCGCGACCCCCACGTCCGGATCGAGGGGGCGGCCCTGTCGTT CCGCTTCAAGGGCAAGAGCGGCAAGACCTGGGACGTGTCGCTGAAGGACCGGCGGGTCGCCCGGATCGTCAAGGCCTGCC AGGATCTGCCGGGGCAGGAGCTGTTCCAGTATCTGGATCCGGACGGCACCCAGCGCGACGTCACCTCCTCGGACGTGAAC GCGTACCTGCGCGAGATCACCGGCAAGGACTTCACCGCGAAGGATTTCCGCACCTGGGCCGGCACCGTGCTGGCGGCGCT GGCGCTGCGGGAGTTCGAGACCTTCGACAGCGAGGCGGGGGCCAAGCGCAACATCCGCGCGGCCATCGAGAACGTCGCCG GCCGCCTCGGCAACACGCCGACGATCTGCCGCAAGTGCTACATTCACCCGCAGATCCTCGACTGCTATCTGGAGGGCGGT CTGCTCCTGCAGGTGAAGGACGCGGTCGAATCGGAACTCAGCGAGGACCTCTCCAGCCTCCGGCCCGAGGAGGCGGCGGT GCTGGGACTGCTGCAGGCGCGCCTCTCAGCCGCGGAGGACGCCGTCAAGGCCAAGGGACGGGTCAAGCCGGCGGGCGCGC GCGGGCGGGGGGCGAAGGCACCCGAGCGGTCCAAGAGCGGGACGGCAGCGGCCAAGCGCGCGTCCGGAGCCCGGAAGGCG GCCGCGGCCGCCTAG
Upstream 100 bases:
>100_bases GCGGATGTGCAGGCCCGGAACGGCGATCGCGTGCCGCCGGTTGTCCAAGGCCTTCTCGCCGGGCGAGGCAGCCGGGCGGC GTCGATGGGAGGGGCAGGTC
Downstream 100 bases:
>100_bases GGGGGCGGTCTCCACGAGACCGCCCGATCCCCCTCTCAGTGCCGGGATTGGTTGTCGTTGCCCGAGGAGCGGCTGTCGGT GCCGCGCCGGACCTGGTCGC
Product: putative DNA topoisomerase I
Products: NA
Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; 2-Alkenal Reductase; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MACVETAESGGDLRAAAEEAGLVYVDDGRPGLTRRRSGTGFRYLDAKGAPVRDKAVLARIRSLAIPPAYTDVWICPRRNG HIQATGRDAKGRKQYRYHPDFRQAREANKFSRIMAFADALPGIRRRVDADMKRPGLSRDKVLATVVHLLETTLIRVGNDD YARTNKSYGLTTLRDPHVRIEGAALSFRFKGKSGKTWDVSLKDRRVARIVKACQDLPGQELFQYLDPDGTQRDVTSSDVN AYLREITGKDFTAKDFRTWAGTVLAALALREFETFDSEAGAKRNIRAAIENVAGRLGNTPTICRKCYIHPQILDCYLEGG LLLQVKDAVESELSEDLSSLRPEEAAVLGLLQARLSAAEDAVKAKGRVKPAGARGRGAKAPERSKSGTAAAKRASGARKA AAAA
Sequences:
>Translated_404_residues MACVETAESGGDLRAAAEEAGLVYVDDGRPGLTRRRSGTGFRYLDAKGAPVRDKAVLARIRSLAIPPAYTDVWICPRRNG HIQATGRDAKGRKQYRYHPDFRQAREANKFSRIMAFADALPGIRRRVDADMKRPGLSRDKVLATVVHLLETTLIRVGNDD YARTNKSYGLTTLRDPHVRIEGAALSFRFKGKSGKTWDVSLKDRRVARIVKACQDLPGQELFQYLDPDGTQRDVTSSDVN AYLREITGKDFTAKDFRTWAGTVLAALALREFETFDSEAGAKRNIRAAIENVAGRLGNTPTICRKCYIHPQILDCYLEGG LLLQVKDAVESELSEDLSSLRPEEAAVLGLLQARLSAAEDAVKAKGRVKPAGARGRGAKAPERSKSGTAAAKRASGARKA AAAA >Mature_403_residues ACVETAESGGDLRAAAEEAGLVYVDDGRPGLTRRRSGTGFRYLDAKGAPVRDKAVLARIRSLAIPPAYTDVWICPRRNGH IQATGRDAKGRKQYRYHPDFRQAREANKFSRIMAFADALPGIRRRVDADMKRPGLSRDKVLATVVHLLETTLIRVGNDDY ARTNKSYGLTTLRDPHVRIEGAALSFRFKGKSGKTWDVSLKDRRVARIVKACQDLPGQELFQYLDPDGTQRDVTSSDVNA YLREITGKDFTAKDFRTWAGTVLAALALREFETFDSEAGAKRNIRAAIENVAGRLGNTPTICRKCYIHPQILDCYLEGGL LLQVKDAVESELSEDLSSLRPEEAAVLGLLQARLSAAEDAVKAKGRVKPAGARGRGAKAPERSKSGTAAAKRASGARKAA AAA
Specific function: Unknown
COG id: COG3569
COG function: function code L; Topoisomerase IB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44125; Mature: 43993
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACVETAESGGDLRAAAEEAGLVYVDDGRPGLTRRRSGTGFRYLDAKGAPVRDKAVLARI CCCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH RSLAIPPAYTDVWICPRRNGHIQATGRDAKGRKQYRYHPDFRQAREANKFSRIMAFADAL HHHCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH PGIRRRVDADMKRPGLSRDKVLATVVHLLETTLIRVGNDDYARTNKSYGLTTLRDPHVRI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEECCCCEEE EGAALSFRFKGKSGKTWDVSLKDRRVARIVKACQDLPGQELFQYLDPDGTQRDVTSSDVN EEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHH AYLREITGKDFTAKDFRTWAGTVLAALALREFETFDSEAGAKRNIRAAIENVAGRLGNTP HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCH TICRKCYIHPQILDCYLEGGLLLQVKDAVESELSEDLSSLRPEEAAVLGLLQARLSAAED HHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AVKAKGRVKPAGARGRGAKAPERSKSGTAAAKRASGARKAAAAA HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCC >Mature Secondary Structure ACVETAESGGDLRAAAEEAGLVYVDDGRPGLTRRRSGTGFRYLDAKGAPVRDKAVLARI CCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH RSLAIPPAYTDVWICPRRNGHIQATGRDAKGRKQYRYHPDFRQAREANKFSRIMAFADAL HHHCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH PGIRRRVDADMKRPGLSRDKVLATVVHLLETTLIRVGNDDYARTNKSYGLTTLRDPHVRI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEECCCCEEE EGAALSFRFKGKSGKTWDVSLKDRRVARIVKACQDLPGQELFQYLDPDGTQRDVTSSDVN EEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHH AYLREITGKDFTAKDFRTWAGTVLAALALREFETFDSEAGAKRNIRAAIENVAGRLGNTP HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCH TICRKCYIHPQILDCYLEGGLLLQVKDAVESELSEDLSSLRPEEAAVLGLLQARLSAAED HHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AVKAKGRVKPAGARGRGAKAPERSKSGTAAAKRASGARKAAAAA HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA