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The map label for this gene is yhfX [H]

Identifier: 170684172

GI number: 170684172

Start: 3716732

End: 3717895

Strand: Reverse

Name: yhfX [H]

Synonym: EcSMS35_3657

Alternate gene names: 170684172

Gene position: 3717895-3716732 (Counterclockwise)

Preceding gene: 170680031

Following gene: 170680107

Centisome position: 73.35

GC content: 53.95

Gene sequence:

>1164_bases
ATGTTTGTAGAAGCATTGAAACGCCAGAACCCGGCGCTAATTTCCGCCGCACTAAGTTTGTGGCAAAAGGGCAAGATCGC
CCCGGACAGCTGGGTGATCGACGTGGATCAGATACTGGAAAACGGTAAGCGGCTGATTGAGACGGCGCGGCTTTACGGCA
TTGAACTGTATCTGATGACCAAGCAGTTTGGTCGTAATCCGTGGCTGGCGGAAAAATTGCTGGCATTAGGCTACAGCGGC
ATTGTGGCGGTGGATTACAAAGAGGCGCGAGTCATGCGCCGCGCTGGTTTGCCGGTGGCGCATCAGGGGCATCTGGTACA
AATCCCTTGTCATCTGGTTTCTGACGCCGTTGAACAGGGAACTGATGTCATCACCGTGTTTACTCTCGACAAAGCGCGGG
AAGTTTCTGCGGCAGCGTTGAAGACCGGACGTGTGCAGTCTGTGCTACTCAAAGTTTATAGCGACGATGATTTTCTTTAT
CCGGGCCAGGAGAGCGGTTTTGCCCTCCAGGTGTTGCCGGAGATTGTCGCCGAAATCCAGAATCTGCCGGGGTTACATTT
GGCGGGACTTACCCATTTCCCTTGCCTGCTTTGGGATGAAGCTGTCGGGAAAGTTTTGCCGACACCGAATCTTCACACGC
TGGTACAAGCACGGGATCAACTGGCGAAATCTGGTATTGCGATTGAGCAACTGAACGCGCCTTCAGCGACCAGCTGCACT
TCGCTGCCATTGCTGGCGGAATACGGTGTGACTCATGCCGAACCCGGTCATGCGCTGACGGGCACTATTCCGGCAAACCA
GCAGGGCGATCAGCCTGAACGTATCGCGATGCTCTGGTTAAGTGAAATCTCCCATCATTTCCGTGGCGACAGCTACTGCT
ACGGCGGCGGTTACTACCGTCGTGGTCACGCGCAACATGCGCTGGTGTTTACGCCAGAAAATCAAAAGATTACTGAAACC
AATCTCAAAACTGTGGATGACAGCAGTATCGACTACACCCTGCCGCTGGCAGGCGAGTTTCCGGTAAGCAGTGCAGTAGT
GCTCTGTTTTCGCACGCAGATTTTTGTCACCCGTAGCGATGTGGTGTTGCTGTCCGGTATTCACCGTGGCGAACCGGAAA
TCGTCGGTCGTTATGACAGTCTTGGAAACTCTCTGGGGGCGTAA

Upstream 100 bases:

>100_bases
TTAACGAAGAGGTTTGAAGCTCCCGACAAATCCACGTCGCACAACCTAAATATTCAAAAAAATGAATATTTAATTCAAGG
AACAGAAACGAGGCAACAAG

Downstream 100 bases:

>100_bases
TGGCGCGATTTGTGGTGTTAGTGATTGATAGCTTTGGCGTAGGCGCAATGAAAGATGTCACGCTGGTGCGTCCACAGGAT
GCCGGGGCGAATACTTGTGG

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MFVEALKRQNPALISAALSLWQKGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHLVSDAVEQGTDVITVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLY
PGQESGFALQVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSDVVLLSGIHRGEPEIVGRYDSLGNSLGA

Sequences:

>Translated_387_residues
MFVEALKRQNPALISAALSLWQKGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHLVSDAVEQGTDVITVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLY
PGQESGFALQVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSDVVLLSGIHRGEPEIVGRYDSLGNSLGA
>Mature_387_residues
MFVEALKRQNPALISAALSLWQKGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSG
IVAVDYKEARVMRRAGLPVAHQGHLVQIPCHLVSDAVEQGTDVITVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLY
PGQESGFALQVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITET
NLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSDVVLLSGIHRGEPEIVGRYDSLGNSLGA

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=387, Percent_Identity=97.1576227390181, Blast_Score=782, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 42327; Mature: 42327

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVEALKRQNPALISAALSLWQKGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMT
CCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHLVSDAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLYPGQESGFALQVLPEIVAEIQ
CCEEEEEEECCCHHHHHHHHHHCHHHEEHHEEECCCCEECCCCCCCCHHHHHHHHHHHHH
NLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
CCCCCEECCHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQKITETNLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSD
CCCCCEEEEECCCCCEEECCCCEECCCCCCEEEEECCCCCCHHHHHHEEEEEEEEEEECC
VVLLSGIHRGEPEIVGRYDSLGNSLGA
EEEEECCCCCCHHEEECHHHHCHHCCC
>Mature Secondary Structure
MFVEALKRQNPALISAALSLWQKGKIAPDSWVIDVDQILENGKRLIETARLYGIELYLMT
CCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEEE
KQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQGHLVQIPCHLVSDAVEQG
HHHCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCC
TDVITVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLYPGQESGFALQVLPEIVAEIQ
CCEEEEEEECCCHHHHHHHHHHCHHHEEHHEEECCCCEECCCCCCCCHHHHHHHHHHHHH
NLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCT
CCCCCEECCHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
SLPLLAEYGVTHAEPGHALTGTIPANQQGDQPERIAMLWLSEISHHFRGDSYCYGGGYYR
CCCHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEE
RGHAQHALVFTPENQKITETNLKTVDDSSIDYTLPLAGEFPVSSAVVLCFRTQIFVTRSD
CCCCCEEEEECCCCCEEECCCCEECCCCCCEEEEECCCCCCHHHHHHEEEEEEEEEEECC
VVLLSGIHRGEPEIVGRYDSLGNSLGA
EEEEECCCCCCHHEEECHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]