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The map label for this gene is lpfD [H]

Identifier: 170683702

GI number: 170683702

Start: 4186355

End: 4187425

Strand: Reverse

Name: lpfD [H]

Synonym: EcSMS35_4093

Alternate gene names: 170683702

Gene position: 4187425-4186355 (Counterclockwise)

Preceding gene: 170684256

Following gene: 170680926

Centisome position: 82.62

GC content: 41.08

Gene sequence:

>1071_bases
ATGAACAAGTATATTATACAGTGGTGCTTTACTGTTTTTATCTTCTCCTTTAGTGGTGCAACATTTGCGGCCCCAAAAGG
TATCTGCACCTCAGATAATGGGGCCTTTCATAGCACACTTGATTTTTCCGGCTATCTGATTACGGCAGACGAGAACAGAG
TGGGAGAGACCTTTAATAAAACCGTGACAAATGGGGACTCTTATCCTGCTCACTGCCATTGTGATACAGGGAAAGTGGGG
GAGTTTCCTTATATTTACTATACAGCGAGAATAAACGAGGCCTTAAGTTATGCGGGTGTTCGTTCTAATGTAAACTACTT
TAATTTGAATCCTAATCTGGATGTTGGAATATCGATAGACCTTCTCGGTGTAGGATACATTAATGCACCTTTTGAATACC
ATGCTAACAGGCCTACTGGAGGTTCATATAAATGTAGTCGCACGGACCCATTAAGTATTTCCAGTGGTGCAAAAGCAATA
ATTTATTTTTATATTAAGAAGACTTTTGCTGGAAAGTTAATTGTCCCTGAAACGCTCGTGGCAAAATTGTACGGAACTAT
AAGCCGTGACACTCCGGTTGATTACTCACAACCTATGGCGGATGTTTATATTCGTGGCGATATCACTGCACCGCAAAGCT
GTGAAATTAACAGTTTAAGACCCATTAATTTTGATTTTAAAGAAATTCCTGCAGCAGATTTTTCTTCGGTAGCTGGAAGT
ACCGTGACAACGCATAAAATTACCAAAACCGTCACCATTGAGTGTGAAAATTTAGGAATACTAAATACTGATGATATCAG
TACCTCTTTTTATGCTACCGAACCCAGTACTGACAACTCAATGGTCGTGACATCAAACCCGAACGTTGGGATAAAAATTT
ATGATAAAAATAATAAGGAAATCAACGTTAACGGTGGTGAACTGCCGACAGATATGGGTAAATCAAACGTCTTTGGTGAA
AAAGCCGGTAGCGTCACTTTTTCTGCTGCTCCTGCAAGCCTCACGGGGGCTCGCCCCGCGCCAGGAACATTTACCGCGAC
TGCAACGATAACAATTGAGATTGTACGCTAA

Upstream 100 bases:

>100_bases
AATGCCGCCACTACATGCACCTTCGATTATTCAATTTCAATACCAGAAAGTGAAAGCGGCTTAATTGAACAAGGTGTGAC
ATGTCATTAAAAGGATTTTT

Downstream 100 bases:

>100_bases
ACGAACTGACAGCGGTGTTCCTCACACCGTTGTCATCTTACGCATTTTTGTCCGCGAGTTTTCACTTTGCATGACAAAAA
GATGACACTACTTTTCTTTT

Product: long polar fimbrial operon protein LpfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNKYIIQWCFTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNKTVTNGDSYPAHCHCDTGKVG
EFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISIDLLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAI
IYFYIKKTFAGKLIVPETLVAKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKEINVNGGELPTDMGKSNVFGE
KAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR

Sequences:

>Translated_356_residues
MNKYIIQWCFTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNKTVTNGDSYPAHCHCDTGKVG
EFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISIDLLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAI
IYFYIKKTFAGKLIVPETLVAKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKEINVNGGELPTDMGKSNVFGE
KAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR
>Mature_356_residues
MNKYIIQWCFTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNKTVTNGDSYPAHCHCDTGKVG
EFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISIDLLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAI
IYFYIKKTFAGKLIVPETLVAKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKEINVNGGELPTDMGKSNVFGE
KAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787173, Length=362, Percent_Identity=24.8618784530387, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789534, Length=372, Percent_Identity=25, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38502; Mature: 38502

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYIIQWCFTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNK
CCCCHHHHHHHHHHHHCCCCEEECCCCCEECCCCCEEEEEECCCEEEEECCCCCCCHHHH
TVTNGDSYPAHCHCDTGKVGEFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISID
HCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHHHHHHCCHHCCCEEEECCCCCEEEEEEE
LLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAIIYFYIKKTFAGKLIVPETLV
EEEEEEECCCCEECCCCCCCCCEEECCCCCCEECCCCCEEEEEEEEHHCCCCEECHHHHH
AKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCC
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKE
EEEEEEEEEEEEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCCE
INVNGGELPTDMGKSNVFGEKAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR
EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MNKYIIQWCFTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNK
CCCCHHHHHHHHHHHHCCCCEEECCCCCEECCCCCEEEEEECCCEEEEECCCCCCCHHHH
TVTNGDSYPAHCHCDTGKVGEFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISID
HCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHHHHHHCCHHCCCEEEECCCCCEEEEEEE
LLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAIIYFYIKKTFAGKLIVPETLV
EEEEEEECCCCEECCCCCCCCCEEECCCCCCEECCCCCEEEEEEEEHHCCCCEECHHHHH
AKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCC
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKE
EEEEEEEEEEEEEEECCCCEEECCCCCCEEEEECCCCCCCEEEECCCCEEEEEEECCCCE
INVNGGELPTDMGKSNVFGEKAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR
EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]