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The map label for this gene is yeeS [H]

Identifier: 170682543

GI number: 170682543

Start: 2265074

End: 2265550

Strand: Reverse

Name: yeeS [H]

Synonym: EcSMS35_2246

Alternate gene names: 170682543

Gene position: 2265550-2265074 (Counterclockwise)

Preceding gene: 170681272

Following gene: 170682030

Centisome position: 44.7

GC content: 58.28

Gene sequence:

>477_bases
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Upstream 100 bases:

>100_bases
TGCCATGACGGTCCATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATCG
ACTGAATGGAGGCAGGGACA

Downstream 100 bases:

>100_bases
CCCGTCACAACCACATCACGCTTGTTTGCACTTTTATCTTCTGTCTTCAGAGGTATCACACTATGAAAATCATCACCCGT
GGTGAAGCCATGCGTATTCA

Product: RadC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Sequences:

>Translated_158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
>Mature_158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788312, Length=148, Percent_Identity=99.3243243243243, Blast_Score=297, Evalue=2e-82,
Organism=Escherichia coli, GI2367100, Length=158, Percent_Identity=81.6455696202532, Blast_Score=268, Evalue=1e-73,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=77.8571428571429, Blast_Score=228, Evalue=1e-61,
Organism=Escherichia coli, GI87082300, Length=120, Percent_Identity=48.3333333333333, Blast_Score=127, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 17674; Mature: 17674

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHEEEEECCCCCCCCEE
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD
EEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH
RLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
HHHHHHHHHHHCEEEEECCCEEEECCHHHHHHHHCCCC
>Mature Secondary Structure
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHEEEEECCCCCCCCEE
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD
EEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH
RLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
HHHHHHHHHHHCEEEEECCCEEEECCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]