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The map label for this gene is ydfC

Identifier: 170681828

GI number: 170681828

Start: 1178317

End: 1178535

Strand: Reverse

Name: ydfC

Synonym: EcSMS35_1156

Alternate gene names: 170681828

Gene position: 1178535-1178317 (Counterclockwise)

Preceding gene: 170681832

Following gene: 170680399

Centisome position: 23.25

GC content: 47.03

Gene sequence:

>219_bases
ATGCAGAAACGAGAACCCGTCATAATCGCGCCAGACTATACCGATGATGAACTTTATGAGTGGATGCGCCAGAAAATTAA
TGCAGCGCAGGATCTGAAATGGGCTAATGAAGCCAGGGCTAAGCAGGCTGAAAATCTGTCCGCTCTGGAGCAGGATATCA
CCAATCTGGAAAAAGCAGCGGCATTAAGCATTGCCAGAATGATTACATACCCGCGTTAA

Upstream 100 bases:

>100_bases
AAGGCGAAGAAGCTCTCAGCTTCAGTGAGTTTAAACAGGCGCTTTCCAGCTCGGCAAAATCTAACGGCTGATAAGCGAAG
TAGCACCGCGAGGAATCAGT

Downstream 100 bases:

>100_bases
TAGCTAACCAACGAAGCTAAGGTTGGTAATTAAGGAGTTCTCCACGGGTGAGGTGGAGTGCGTGCGCCGGACACGGGTGA
GCATCCGGCACTGACAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAALSIARMITYPR

Sequences:

>Translated_72_residues
MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAALSIARMITYPR
>Mature_72_residues
MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAAALSIARMITYPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787856, Length=72, Percent_Identity=100, Blast_Score=145, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFC_ECOLI (P21418)

Other databases:

- EMBL:   X07465
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D30383
- RefSeq:   AP_002195.1
- RefSeq:   NP_416091.1
- EnsemblBacteria:   EBESCT00000005140
- EnsemblBacteria:   EBESCT00000016061
- GeneID:   946107
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1565
- KEGG:   eco:b1573
- EchoBASE:   EB1279
- EcoGene:   EG11302
- GeneTree:   EBGT00050000010251
- HOGENOM:   HBG467750
- OMA:   WANEART
- ProtClustDB:   CLSK443797
- BioCyc:   EcoCyc:EG11302-MONOMER
- Genevestigator:   P21418

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8351; Mature: 8351

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA
CCCCCCEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSIARMITYPR
HHHHHHHHHCCC
>Mature Secondary Structure
MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAENLSALEQDITNLEKAA
CCCCCCEEECCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSIARMITYPR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3041373; 9097039; 9278503