| Definition | Escherichia coli SMS-3-5 chromosome, complete genome. |
|---|---|
| Accession | NC_010498 |
| Length | 5,068,389 |
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The map label for this gene is sorB [H]
Identifier: 170681766
GI number: 170681766
Start: 4576951
End: 4577445
Strand: Reverse
Name: sorB [H]
Synonym: EcSMS35_4479
Alternate gene names: 170681766
Gene position: 4577445-4576951 (Counterclockwise)
Preceding gene: 170681082
Following gene: 170684109
Centisome position: 90.31
GC content: 45.05
Gene sequence:
>495_bases ATGAACATTACGCTCGCCCGCATTGATGACCGCCTGATCCACGGCCAGGTCACTACCGTCTGGTCTAAGGTGGCTAACGC CCAACGCATTATTATCTGCAATGACGAAGTTTATAACGATGAAGTTCGCCGGACATTATTGCGTCAGGCTGCGCCACCGG GAATGAAGGTTAACGTGGTCAATATTGAAAAAGCCGTCGCGGTTTATCACAACCCGCAATATCAGGACGAAACCGTTTTT TATCTTTTCACTCGCCCACAAGATGCCTTAGCAATGGTTCGCCAGGGGGTAAAAATAGGTACCCTGAATATTGGCGGTAT GGCCTGGCGTCCTGGTAAGAAACAGTTAACCAAAGCAGTTTCATTAGATGACGATGATATTAACGCATTTCATGAGTTAA ATAATCTTGGCGTCATACTGGATTTACGCGTCGTAGCGTCAGATCCCTCAATCAATATTATCGACAAAATAAACGAACAG TTAATCGCAAATTAA
Upstream 100 bases:
>100_bases ACAGCATGAATATTGATGAACTGTGTGAACACCTGACGCAAATCGCAAAGCAAATCTGCGTCGTCTGGAGACAGGTGGCA ACAGCGGAGGAGGATTTCTG
Downstream 100 bases:
>100_bases ATAATAGCGCCTGTGTACATATGCTTTAACAGGCAGGGATGACGACACTTAAAAGGTGACAAATCATGGAAATAAGTACC CTACAAATTATTGCTATATT
Product: PTS system mannose/fructose/sorbose family IIB subunit
Products: NA
Alternate protein names: EIIB-Sor; EIII-B-Sor; PTS system sorbose-specific EIIB component [H]
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRRTLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVF YLFTRPQDALAMVRQGVKIGTLNIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ LIAN
Sequences:
>Translated_164_residues MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRRTLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVF YLFTRPQDALAMVRQGVKIGTLNIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ LIAN >Mature_164_residues MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRRTLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVF YLFTRPQDALAMVRQGVKIGTLNIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ LIAN
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG3444
COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-4 domain [H]
Homologues:
Organism=Escherichia coli, GI1788120, Length=159, Percent_Identity=52.2012578616352, Blast_Score=171, Evalue=2e-44, Organism=Escherichia coli, GI87082217, Length=153, Percent_Identity=33.9869281045752, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789527, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=6e-13,
Paralogues:
None
Copy number: 220 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 260 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004720 - InterPro: IPR018455 [H]
Pfam domain/function: PF03830 PTSIIB_sorb [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 18404; Mature: 18404
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS51101 PTS_EIIB_TYPE_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRRTLLRQAAPPGMKVNVV CCEEEEECCCEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEE NIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIGTLNIGGMAWRPGKKQLTKAV ECCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHCCCEEEEEEECCEEECCCHHHHHHHC SLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQLIAN CCCCCCHHHHHHHCCCEEEEEEEEEECCCCEEHHHHHHHHHHCC >Mature Secondary Structure MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRRTLLRQAAPPGMKVNVV CCEEEEECCCEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEE NIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIGTLNIGGMAWRPGKKQLTKAV ECCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHCCCEEEEEEECCEEECCCHHHHHHHC SLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQLIAN CCCCCCHHHHHHHCCCEEEEEEEEEECCCCEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7947968 [H]