| Definition | Escherichia coli SMS-3-5 chromosome, complete genome. |
|---|---|
| Accession | NC_010498 |
| Length | 5,068,389 |
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The map label for this gene is uup [H]
Identifier: 170681436
GI number: 170681436
Start: 2175723
End: 2177630
Strand: Reverse
Name: uup [H]
Synonym: EcSMS35_2170
Alternate gene names: 170681436
Gene position: 2177630-2175723 (Counterclockwise)
Preceding gene: 170683350
Following gene: 170680788
Centisome position: 42.96
GC content: 52.73
Gene sequence:
>1908_bases ATGTCATTAATCAGTATGCATGGCGCATGGCTGTCGTTCAGCGACGCGCCGCTTCTCGATAACGCAGAACTGCATATCGA AGATAACGAACGTGTTTGTCTGGTAGGTCGTAACGGCGCAGGCAAATCGACGTTAATGAAGATCCTCAACCGTGAACAGG GGCTGGATGACGGTCGCATTATTTATGAGCAAGATTTGATTGTAGCTCGTCTGCAACAGGATCCGCCGCGTAACGTTGAG GGTAGCGTTTATGATTTCGTTGCCGAAGGCATTGAAGAACAAGCGGAATATCTGAAACGCTATCACGATCTTTCGCGCCT GGTGATGAACGACCCGAGCGAGAAAAATCTCAACGAACTGGCGAAGGTTCAGGAACAGCTGGATCACCACAACCTGTGGC AGCTGGAAAACCGCATCAACGAAGTGCTGGCGCAACTGGGATTAGATCCTAATGTTGCGCTGTCGTCGCTTTCCGGCGGC TGGTTGCGTAAAGCGGCATTAGGACGCGCGCTGGTGAGCAATCCGCGTGTATTGCTGCTCGACGAACCGACTAACCACCT GGATATTGAAACCATCGACTGGCTGGAAGGGTTCCTCAAAACCTTCAATGGGACAATTATTTTCATTTCCCACGACCGTT CGTTTATCCGCAATATGGCGACGCGCATTGTTGATCTCGATCGCGGCAAGCTGGTGACCTATCCAGGGAATTACGACCAG TACCTGCTGGAAAAAGAAGAAGCCCTGCGCGTGGAAGAATTACAAAATGCCGAGTTCGATCGCAAACTGGCGCAGGAAGA GGTGTGGATCCGCCAGGGGATCAAAGCGCGCCGTACCCGTAATGAAGGCCGCGTACGCGCCCTGAAAGCAATGCGCCGTG AACGTAGCCAGCGCCGTGAGGTCATGGGGACGGCAAAGATGCAGGTGGAAGAAGCCAGCCGCTCCGGAAAGATCGTTTTC GAAATGGAAGACGTTTGCTACCAGGTTGACGGTAAGCAACTGGTGAAAGATTTTTCTGCCCAGGTTCTACGTGGCGACAA AATTGCCCTGATTGGCCCGAATGGGTGCGGCAAAACCACGCTGCTGAAACTGATGCTCGGTCAGCTTCAGGCGGACAGCG GGCGTATTCACGTTGGCACCAAACTGGAAGTGGCTTATTTCGATCAGCACCGTGCGGAACTGGATCCCGATAAAACGGTG ATGGATAACCTTGCCGAAGGTAAGCAAGAGGTGATGGTTAACGGCAAGCCACGCCACGTATTGGGCTATTTGCAGGACTT CCTGTTCCATCCGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTT TGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCGACCAACGATCTTGATGTCGAAACGCTGGAACTGCTGGAA GAACTGATCGACAGCTACCAGGGCACGGTATTGCTGGTAAGCCACGATCGTCAGTTTGTCGATAACACCGTTACAGAATG CTGGATCTTCGAAGGCGGCGGTAAAATTGGTCGTTATGTCGGCGGTTATCATGATGCCCGTGGTCAGCAAGAGCAGTATG TGGCGCTCAAACAGCCTGCGGTGAAAAAAACCGAAGAAGCCGCCGCGGCAAAAGCAGAAACTGTAAAACGCAGCAGTAGC AAACTAAGCTATAAATTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTTGAAGATCTGGAGGCGAAGCTGGAAGCCCT ACAGACGCAGGTGGCGGATGCTTCCTTCTTCAGTCAGCCCCATGAGCAGACACAAAAAGTGCTCGCTGATATGGCTGCTG CAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGA
Upstream 100 bases:
>100_bases AAGCACAAGAAATTACGCAAAAAACGCTCTCCCAGGATTTCGCCCGTAACCGCCAGATCCACAACTGCTGGCTGATTACC GCAGCCTGAAAGGAATAGTA
Downstream 100 bases:
>100_bases TCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAAC CAACACTTTGTTCGTCATCT
Product: ABC ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 634
Protein sequence:
>635_residues MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVE GSVYDFVAEGIEEQAEYLKRYHDLSRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSQRREVMGTAKMQVEEASRSGKIVF EMEDVCYQVDGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTV MDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSS KLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG
Sequences:
>Translated_635_residues MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVE GSVYDFVAEGIEEQAEYLKRYHDLSRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSQRREVMGTAKMQVEEASRSGKIVF EMEDVCYQVDGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTV MDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSS KLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG >Mature_634_residues SLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEG SVYDFVAEGIEEQAEYLKRYHDLSRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGW LRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQY LLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSQRREVMGTAKMQVEEASRSGKIVFE MEDVCYQVDGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVM DNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEE LIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSK LSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=31.2267657992565, Blast_Score=229, Evalue=6e-60, Organism=Homo sapiens, GI27881506, Length=517, Percent_Identity=30.9477756286267, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI10947137, Length=517, Percent_Identity=30.9477756286267, Blast_Score=204, Evalue=3e-52, Organism=Homo sapiens, GI10947135, Length=532, Percent_Identity=30.0751879699248, Blast_Score=182, Evalue=1e-45, Organism=Homo sapiens, GI69354671, Length=532, Percent_Identity=30.0751879699248, Blast_Score=182, Evalue=1e-45, Organism=Homo sapiens, GI42741659, Length=314, Percent_Identity=27.3885350318471, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI9955963, Length=200, Percent_Identity=27.5, Blast_Score=69, Evalue=2e-11, Organism=Escherichia coli, GI1787182, Length=635, Percent_Identity=99.3700787401575, Blast_Score=1294, Evalue=0.0, Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=35.077519379845, Blast_Score=291, Evalue=1e-79, Organism=Escherichia coli, GI1787041, Length=505, Percent_Identity=33.4653465346535, Blast_Score=258, Evalue=7e-70, Organism=Escherichia coli, GI1789751, Length=626, Percent_Identity=28.594249201278, Blast_Score=243, Evalue=3e-65, Organism=Escherichia coli, GI1788506, Length=571, Percent_Identity=24.5183887915937, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=32.2916666666667, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=27.5303643724696, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=26.9911504424779, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=27.2321428571429, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1787370, Length=190, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87082267, Length=215, Percent_Identity=28.8372093023256, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=30.7291666666667, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=29.9107142857143, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=29.126213592233, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1787089, Length=257, Percent_Identity=24.5136186770428, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786319, Length=180, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=24.3589743589744, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1786563, Length=197, Percent_Identity=30.9644670050761, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=224, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1787164, Length=161, Percent_Identity=34.1614906832298, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=31.2796208530806, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17559834, Length=570, Percent_Identity=28.9473684210526, Blast_Score=207, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=29.6367112810707, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17553372, Length=531, Percent_Identity=31.638418079096, Blast_Score=195, Evalue=6e-50, Organism=Caenorhabditis elegans, GI212646699, Length=239, Percent_Identity=28.4518828451883, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17569143, Length=268, Percent_Identity=29.4776119402985, Blast_Score=70, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=26.7857142857143, Blast_Score=68, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=526, Percent_Identity=29.8479087452471, Blast_Score=209, Evalue=7e-55, Organism=Saccharomyces cerevisiae, GI6321121, Length=538, Percent_Identity=30.1115241635688, Blast_Score=207, Evalue=3e-54, Organism=Saccharomyces cerevisiae, GI6323278, Length=380, Percent_Identity=28.1578947368421, Blast_Score=135, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6324314, Length=446, Percent_Identity=25.7847533632287, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6325030, Length=241, Percent_Identity=28.6307053941909, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=31.7757009345794, Blast_Score=228, Evalue=9e-60, Organism=Drosophila melanogaster, GI24642252, Length=534, Percent_Identity=29.2134831460674, Blast_Score=205, Evalue=9e-53, Organism=Drosophila melanogaster, GI18859989, Length=534, Percent_Identity=29.2134831460674, Blast_Score=205, Evalue=9e-53, Organism=Drosophila melanogaster, GI24641342, Length=548, Percent_Identity=29.5620437956204, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24659289, Length=255, Percent_Identity=30.5882352941176, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=27.4111675126904, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI17136662, Length=233, Percent_Identity=29.1845493562232, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI281363262, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24653245, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 72098; Mature: 71967
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI CCEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDLSRLVMNDPSEKNLNEL EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ ECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCCHH YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSQRRE HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHH VMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQLVKDFSAQVLRGDKIALIGPNGCGKTT HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV HHHHHHHHHCCCCCEEEECCEEEEEEEHHHHCCCCCCHHHHHHHHCCCHHEEECCCCHHH LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA HHHHHHCCEEEEEECCHHHHHCCHHEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHCCCC VKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI CEEECCCCEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCE IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDLSRLVMNDPSEKNLNEL EEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEE DEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQ ECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCEEEECCCCCHH YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERSQRRE HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHH VMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQLVKDFSAQVLRGDKIALIGPNGCGKTT HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH LLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHV HHHHHHHHHCCCCCEEEECCEEEEEEEHHHHCCCCCCHHHHHHHHCCCHHEEECCCCHHH LGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE HHHHHHHHHCCHHHCCHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH ELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPA HHHHHHCCEEEEEECCHHHHHCCHHEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHCCCC VKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH HEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 9139905; 7751275 [H]