Click here to switch to the map view.

The map label for this gene is ybiH [H]

Identifier: 170681317

GI number: 170681317

Start: 821668

End: 822339

Strand: Reverse

Name: ybiH [H]

Synonym: EcSMS35_0819

Alternate gene names: 170681317

Gene position: 822339-821668 (Counterclockwise)

Preceding gene: 170683570

Following gene: 170683048

Centisome position: 16.22

GC content: 53.57

Gene sequence:

>672_bases
ATGAATAATCCTGCCATGACAATCAAGGGTGAACAGGCGAAAAAACAGCTGATTGCTGCGGCACTGGCACAGTTTGGTGA
ATATGGAATGAACGCCACCACCCGCGAGATAGCCGCCCAGGCCGGGCAGAATATCGCTGCCATCACCTACTACTTCGGTT
CGAAAGAAGATTTGTACCTCGCCTGCGCCCAATGGATTGCCGATTTCATTGGCGAGCAGTTCCGTCCGCACGCTGAAGAA
GCCGAACGTTTGTTCGCACAACCACAGCCGGATCGGGCTGCCATCCGCGAACTGATCCTTCGCGCCTGCAGGAACATGAT
TAAGCTGCTCACCCAGGATGACACCGTCAACCTCAGCAAATTTATCTCCCGTGAGCAGCTCTCTCCCACGGCAGCCTACC
ACCTGGTGCACGAACAGGTGATTAGTCCGCTACACAGCCACCTGACACGCCTGATTGCCGCCTGGACCGGCTGCGACGCT
AGCGATACCCGCATGATCCTTCATACCCATGCGTTGATTGGTGAGATTCTGGCGTTTCGTCTTGGCAAAGAAACTATTCT
GTTACGTACCGGCTGGACCGCGTTCGATGAAGAAAAGACCGAACTGATCAACCAGACGGTGACCTGTCATATTGACCTGA
TTTTGCAAGGATTATCGCAAAGGAGTTTGTAG

Upstream 100 bases:

>100_bases
ATCCCTGCGACTGGCGTAGCTAAAATTCTTAGCCATACTGGACAACTCCCCTATGGAGTCATAATCTTAATCAATCATTT
GATTAAGAATGGACTGTGCG

Downstream 100 bases:

>100_bases
TGATGAAAAAACCTGTCGTGATCGGACTGGCGGTAGTAGTACTTGCCGCCGTGGTTGCCGGAGGCTACTGGTGGTATCAA
AGCCGCCAGGATAACGGCCT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEE
AERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
SDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL

Sequences:

>Translated_223_residues
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEE
AERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
SDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
>Mature_223_residues
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEE
AERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
SDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=223, Percent_Identity=99.5515695067265, Blast_Score=460, Evalue=1e-131,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24990; Mature: 24990

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYL
CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHH
ACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
FISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDASDTRMILHTHALIGEILAFR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYL
CCCCCEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHH
ACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
FISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDASDTRMILHTHALIGEILAFR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
LGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]