| Definition | Escherichia coli SMS-3-5 chromosome, complete genome. |
|---|---|
| Accession | NC_010498 |
| Length | 5,068,389 |
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The map label for this gene is flu1 [H]
Identifier: 170680707
GI number: 170680707
Start: 2267288
End: 2270134
Strand: Reverse
Name: flu1 [H]
Synonym: EcSMS35_2249
Alternate gene names: 170680707
Gene position: 2270134-2267288 (Counterclockwise)
Preceding gene: 170683526
Following gene: 170679807
Centisome position: 44.79
GC content: 57.5
Gene sequence:
>2847_bases ATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCTTCCGAACTGGC CCGCTCACGGGGAAAACGCGCCGGTGTGGCGGTTGCGCTGTCTCTTGCTGCTGTCACGCCAGTCCCGGCACTGGCTGCTG ACACGGTTGTAGAGGCGGGAGAAACCGTGAACGGCGGAACACTGACAAATCATGACAACCAGATTGTCTTCGGTACGACC AACGGAATGACCATCAGTACCGGGCTGGAGTATGGGACGGATAACGAGGCCAATACCGGCGGGCAATGGGTACAGGATGG CGGCACAGCCAGTAATACCACCATCAGCAGCGGCGGGCTCCAGTTTGTAGGTGCCGGGGGAAAGGCTACAGACACAATAA TCAATGAAGGAGGCGGACAAAGCCTGAAGGGACTGGCACTGAACACCACGCTGAATGGTGGCGAGCAGTGGATGCATGAA GGTGCGATAGCCACAGGAACCGTCATTAATGATAAGGGCTGGCAGGTCGTCAAACCCGGCGCAGTGGCAACAGACACCGT TGTGAATACCGGCGCAGAAGGAGGACCGGATGCAGAAAATGGTGATACCGGGCAGTTTGTTCGCGGAAATGCCGTACGTA CCACCATCAATAAAAATGGTCGTCAGATTGTGACTGTTGAAGGAACAGCAAATACCACTGTGGTTTATGCCGGCGGCGAC CAGACGGTACATGGCCACGCACTGGATACCACGCTGAATGGCGGTAACCAGTATGTACACAACGGCGGTACAACGTCTGA CACTGTTGTGAACAGTGACGGCTGGCAGATTATCAAGGAAGGTGGTCTGGCGGATTTCACCACCGTTAACCAGAAAGGCA AACTGCAGGTGAACGCCGGTGGTACAGCCACGAATGTCACCCTGAAGCAGGGAGGCGCACTGGTCACCAGTACGGCGGCA ACCGTCACCGGCAGCAACCGTCTGGGCAATTTCGCGGTGGAAAACGGTAAGGCTGACGGTGTTGTTCTGGAGTCCGGCGG TCGTCTGGATGTACTGGAGGGTCATTCAGCGCAGAAAACACGGGTGGATGACGGCGGTACCCTGGCAGTGTCTGCCGGTG GTAAGGCGACAGGTGTCACCATGACATCCGGTGGTGCCCTGATTGCAGACAGTGGTGCCACTGTTGAGGGGACCAATGCC AGCGGTAAGTTCAGTATTGATGGCATATCCGGTCAGGCCAGCGGCCTGCTGCTGGAAAATGGCGGCAGCTTTACGGTTAA TGCCGGGGGACAGGCTGGCAACACCACTGTCGGACATCGTGGAACACTGACGCTGGCTGCCGGGGGAAGTCTGAGTGGCA GAACACAGCTCAGTAAAGGCGCCAGCATGGTACTGAATGGTGATGTGGTCAGTACCGGCGATATTGTTAACGCAGGGGAG ATTCGCTTTGATAATCAGACGACACAGGATGCCGTCCTGAGCCGTGCTGTTGCAAAAGGCGACGCCCCGGTAACGTTCCA TAAACTGACCACCAGTAACCTCACCGGTCAGGGTGGCACCATCAATATGCGTGTTCGCCTTGATGGCAGCAATGCCTCTG ACCAGCTGGTGATTAATGGTGGTCAGGCAACCGGCAAAACCTGGCTTGCGTTCACAAATGTCGGAAACAGTAACCTCGGG GTGGCAACTTCCGGACAGGGTATCCGGGTTGTGGATGCACAGAATGGTGCCACCACAGAAGAAGGTGCGTTTGCCCTGAG TCGCCCGCTTCAGGCCGGTGCCTTTAACTACACCCTGAACCGTGACAGCGATGAAGACTGGTACCTGCGCAGTGAAAATG CTTATCGTGCTGAAGTCCCCCTGTATGCCTCCATGCTGACACAGGCAATGGACTATGACCGGATTCTGGCAGGCTCCCGC AGCCATCAGACCGGTGTAAACGGTGAAAATAACAGCGTCCGTCTCAGCATTCAGGGCGGTCATCTCGGTCACGATAACAA CGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGCTTCGTCCGTCTGGAGAGTGACCTGCTGAGAA CAGAGGTTGCCGGTATGTCTGTGACCGCGGGGGTATATAGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGAC GGCTCCCGCGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCT GTGGGCTGACATTATGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCT GGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAACCACAACTGCAGTAC ACCTGGCAGGGACTTTCCCTGGATGACGGCCAGGATAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATAT GCGTGCCGGCTTCCGTCTGGGCAGCCACAACGATATGAGCTTTGGTGAAGGCACCTCATCCCGTGACACCCTGCGCGACA GTGCAAAACACCGTGTGCGTGAACTGCCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGTTCCCGGGGT GACATGAGCATGGGGACAGCCGCCGCCGGCAGTAACATGACGTTCTCACCGTCCCAGAATGGCACGTCACTGGACCTGCA GGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCACCCTGGGCGTTCAGGCCGGTTATGCCCACAGCGTCAGCGGCAGCA GCGCCGAAGGCTATAACGGTCAGGCCACGCTGAATGTGACTTTCTGA
Upstream 100 bases:
>100_bases CCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCA CCCTCTGTAAGGAAAAGCTG
Downstream 100 bases:
>100_bases TAATCAGGTCACTCCCCTTCAGGCCCCGGTCATAATGACCGGGGCCTTTTACTTTCAGGGAGTAACAGATATGCCGGGTT GTACATCACGTTTATTGCCG
Product: antigen 43
Products: NA
Alternate protein names: AG43; Fluffing protein [H]
Number of amino acids: Translated: 948; Mature: 948
Protein sequence:
>948_residues MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTPVPALAADTVVEAGETVNGGTLTNHDNQIVFGTT NGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHE GAIATGTVINDKGWQVVKPGAVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGD QTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA TVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNA SGKFSIDGISGQASGLLLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE IRFDNQTTQDAVLSRAVAKGDAPVTFHKLTTSNLTGQGGTINMRVRLDGSNASDQLVINGGQATGKTWLAFTNVGNSNLG VATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSR SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSVDVKDDD GSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQY TWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRG DMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF
Sequences:
>Translated_948_residues MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTPVPALAADTVVEAGETVNGGTLTNHDNQIVFGTT NGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHE GAIATGTVINDKGWQVVKPGAVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGD QTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA TVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNA SGKFSIDGISGQASGLLLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE IRFDNQTTQDAVLSRAVAKGDAPVTFHKLTTSNLTGQGGTINMRVRLDGSNASDQLVINGGQATGKTWLAFTNVGNSNLG VATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSR SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSVDVKDDD GSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQY TWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRG DMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF >Mature_948_residues MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTPVPALAADTVVEAGETVNGGTLTNHDNQIVFGTT NGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGLQFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHE GAIATGTVINDKGWQVVKPGAVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGD QTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAGGTATNVTLKQGGALVTSTAA TVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQKTRVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNA SGKFSIDGISGQASGLLLENGGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE IRFDNQTTQDAVLSRAVAKGDAPVTFHKLTTSNLTGQGGTINMRVRLDGSNASDQLVINGGQATGKTWLAFTNVGNSNLG VATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLNRDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSR SHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSVDVKDDD GSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQY TWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLGSHNDMSFGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRG DMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF
Specific function: Controls colony form variation and autoaggregation. May function as an adhesin [H]
COG id: COG3468
COG function: function code MU; Type V secretory pathway, adhesin AidA
Gene ontology:
Cell location: Antigen 43 beta chain:Cell outer membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI48994897, Length=1039, Percent_Identity=71.6073147256978, Blast_Score=1362, Evalue=0.0, Organism=Escherichia coli, GI87082145, Length=418, Percent_Identity=34.688995215311, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI1787954, Length=190, Percent_Identity=38.4210526315789, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 [H]
Pfam domain/function: PF03797 Autotransporter [H]
EC number: NA
Molecular weight: Translated: 97554; Mature: 97554
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTPVPALAADTVVEAG CCCCCCCCEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEEEHHHCCCCHHHHHHHHHCC ETVNGGTLTNHDNQIVFGTTNGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGL CCCCCCEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCE QFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPG EEEECCCCCEEHEEECCCCCCCCEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEEECCC AVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGD CCEECCEEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCEEEEEECCC QTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAG CEEECEEEEEEECCCCEEEECCCCCCCEEECCCCCEEEECCCCEEEEEECCCCEEEEECC GTATNVTLKQGGALVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQKT CCEEEEEEECCCEEEEEEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCE RVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGKFSIDGISGQASGLLLEN ECCCCCEEEEECCCCEEEEEEECCCEEEECCCCEEECCCCCCEEEEECCCCCCCEEEEEC GGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE CCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEECCCEEECCE IRFDNQTTQDAVLSRAVAKGDAPVTFHKLTTSNLTGQGGTINMRVRLDGSNASDQLVING EEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEC GQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLN CCCCCCEEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEC RDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGG CCCCCCCEEECCCCEEEECCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC HLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSVDVKDDD CCCCCCCCCEECCCCCCCCCCEEEEEECCHHHHHHHCCCEEECCHHHCCCCCEEEEECCC GSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGWGWLGSL CCCCCCCCCCCCCCCCEEEEEECCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCEEECCC ETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLGSHNDMS CCCCCEEECCCEEECCCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHEECCCCCCCC FGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQN CCCCCCCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC GTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF CCEEEEECCCHHHCCCCEEEEEECCEEECCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure MKRHLNTSYRLVWNHITGTLVVASELARSRGKRAGVAVALSLAAVTPVPALAADTVVEAG CCCCCCCCEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEEEHHHCCCCHHHHHHHHHCC ETVNGGTLTNHDNQIVFGTTNGMTISTGLEYGTDNEANTGGQWVQDGGTASNTTISSGGL CCCCCCEEECCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCE QFVGAGGKATDTIINEGGGQSLKGLALNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPG EEEECCCCCEEHEEECCCCCCCCEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEEECCC AVATDTVVNTGAEGGPDAENGDTGQFVRGNAVRTTINKNGRQIVTVEGTANTTVVYAGGD CCEECCEEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEECCCCEEEEEECCC QTVHGHALDTTLNGGNQYVHNGGTTSDTVVNSDGWQIIKEGGLADFTTVNQKGKLQVNAG CEEECEEEEEEECCCCEEEECCCCCCCEEECCCCCEEEECCCCEEEEEECCCCEEEEECC GTATNVTLKQGGALVTSTAATVTGSNRLGNFAVENGKADGVVLESGGRLDVLEGHSAQKT CCEEEEEEECCCEEEEEEEEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCE RVDDGGTLAVSAGGKATGVTMTSGGALIADSGATVEGTNASGKFSIDGISGQASGLLLEN ECCCCCEEEEECCCCEEEEEEECCCEEEECCCCEEECCCCCCEEEEECCCCCCCEEEEEC GGSFTVNAGGQAGNTTVGHRGTLTLAAGGSLSGRTQLSKGASMVLNGDVVSTGDIVNAGE CCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCEEECCCEEECCE IRFDNQTTQDAVLSRAVAKGDAPVTFHKLTTSNLTGQGGTINMRVRLDGSNASDQLVING EEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEC GQATGKTWLAFTNVGNSNLGVATSGQGIRVVDAQNGATTEEGAFALSRPLQAGAFNYTLN CCCCCCEEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEC RDSDEDWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGVNGENNSVRLSIQGG CCCCCCCEEECCCCEEEECCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC HLGHDNNGGIARGATPESSGSYGFVRLESDLLRTEVAGMSVTAGVYSAAGHSSVDVKDDD CCCCCCCCCEECCCCCCCCCCEEEEEECCHHHHHHHCCCEEECCHHHCCCCCEEEEECCC GSRAGTVRDDAGSLGGYLNLVHTSSGLWADIMAQGTRHSMKASSDNNDFRARGWGWLGSL CCCCCCCCCCCCCCCCEEEEEECCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCEEECCC ETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNAGYVKFGHGSAQHMRAGFRLGSHNDMS CCCCCEEECCCEEECCCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHEECCCCCCCC FGEGTSSRDTLRDSAKHRVRELPVNWWVQPSVIRTFSSRGDMSMGTAAAGSNMTFSPSQN CCCCCCCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC GTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYNGQATLNVTF CCEEEEECCCHHHCCCCEEEEEECCEEECCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2661530; 9298646; 9103983 [H]