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The map label for this gene is sodC_2 [H]

Identifier: 170680640

GI number: 170680640

Start: 3245951

End: 3246475

Strand: Reverse

Name: sodC_2 [H]

Synonym: EcSMS35_3163

Alternate gene names: 170680640

Gene position: 3246475-3245951 (Counterclockwise)

Preceding gene: 170681562

Following gene: 170682946

Centisome position: 64.05

GC content: 47.62

Gene sequence:

>525_bases
ATGAAACGTAAACTTATTGCCTTTGTGATTCTGGCTACATCATCCTGTGGATATGCAGCCACCAAAGATGTAACAATGAA
TCTTGTTGATAGTGACGGAAAAGAGCGAAATATTGGTAAAATAACCATCCAGAAGACACCCTACGGGCTGCTGTTCACTC
CTGATCTTCACTCCTTACCCGCCGGCATTCATGGTTTTCATGTACATGAAAACGCAAGTTGTGCTCCTGCCCTGAAAGAT
GGAAAAACTGTCGCTGCTTTATCTGCAGGTGGTCACTTTGACCCGGAAAAAACAGGGAAGCATCTCGGTCCATGGTCTCC
TGATGGCCACCTAGGTGATCTCCCTGCGCTTTATGTCACTCATGACGGAAAAGCAACCTACCCGGTGCTTGCGCCAAGAC
TATCTGAATTAAAGGAGCTCGATGGCCGTTCGCTAATGCTCCACGCAGGAGGTGATAATCATGATGACCATCCTGAACCT
CTAGGTGGCGGTGGTGCAAGAATTGCCTGTGGTATCATCCCATAA

Upstream 100 bases:

>100_bases
ACTGATAGTCACATTCAATAACTATCATAAGCTATCATCTGGCTGACTGTTATTTCGCAACAGTTATTGAGTAAATCTTT
AACCTGTTAACAGAGGGTTT

Downstream 100 bases:

>100_bases
TCAATCAGGTAAGGGATATCCTCCCTTACCCTTAATCTTCCCTGGCTGCATGTGCATATCTTTCAGTTACTGTGAGATAC
CTGTATTACGGTGTCTTTTT

Product: superoxide dismutase (Cu-Zn)

Products: NA

Alternate protein names: sodCI [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKRKLIAFVILATSSCGYAATKDVTMNLVDSDGKERNIGKITIQKTPYGLLFTPDLHSLPAGIHGFHVHENASCAPALKD
GKTVAALSAGGHFDPEKTGKHLGPWSPDGHLGDLPALYVTHDGKATYPVLAPRLSELKELDGRSLMLHAGGDNHDDHPEP
LGGGGARIACGIIP

Sequences:

>Translated_174_residues
MKRKLIAFVILATSSCGYAATKDVTMNLVDSDGKERNIGKITIQKTPYGLLFTPDLHSLPAGIHGFHVHENASCAPALKD
GKTVAALSAGGHFDPEKTGKHLGPWSPDGHLGDLPALYVTHDGKATYPVLAPRLSELKELDGRSLMLHAGGDNHDDHPEP
LGGGGARIACGIIP
>Mature_174_residues
MKRKLIAFVILATSSCGYAATKDVTMNLVDSDGKERNIGKITIQKTPYGLLFTPDLHSLPAGIHGFHVHENASCAPALKD
GKTVAALSAGGHFDPEKTGKHLGPWSPDGHLGDLPALYVTHDGKATYPVLAPRLSELKELDGRSLMLHAGGDNHDDHPEP
LGGGGARIACGIIP

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=173, Percent_Identity=56.6473988439306, Blast_Score=194, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18328; Mature: 18328

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLIAFVILATSSCGYAATKDVTMNLVDSDGKERNIGKITIQKTPYGLLFTPDLHSLP
CCCCEEEEEEEEECCCCCEEECCEEEEEECCCCCCCCCEEEEEECCCCEEEECCCHHHCC
AGIHGFHVHENASCAPALKDGKTVAALSAGGHFDPEKTGKHLGPWSPDGHLGDLPALYVT
CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEE
HDGKATYPVLAPRLSELKELDGRSLMLHAGGDNHDDHPEPLGGGGARIACGIIP
ECCCCCCCEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKRKLIAFVILATSSCGYAATKDVTMNLVDSDGKERNIGKITIQKTPYGLLFTPDLHSLP
CCCCEEEEEEEEECCCCCEEECCEEEEEECCCCCCCCCEEEEEECCCCEEEECCCHHHCC
AGIHGFHVHENASCAPALKDGKTVAALSAGGHFDPEKTGKHLGPWSPDGHLGDLPALYVT
CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEE
HDGKATYPVLAPRLSELKELDGRSLMLHAGGDNHDDHPEPLGGGGARIACGIIP
ECCCCCCCEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9379906; 9391141; 11677609; 8869506; 10970746 [H]