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The map label for this gene is ycdB [H]

Identifier: 170680570

GI number: 170680570

Start: 2112481

End: 2113752

Strand: Reverse

Name: ycdB [H]

Synonym: EcSMS35_2104

Alternate gene names: 170680570

Gene position: 2113752-2112481 (Counterclockwise)

Preceding gene: 170682015

Following gene: 170683480

Centisome position: 41.7

GC content: 54.09

Gene sequence:

>1272_bases
ATGCAGTATGAAGATGAAAACGGCGTGAATGAACCGTCACGCCGACGTTTACTGAAAGGGATTGGTGCGTTGGCGCTGGC
GGGAAGTTGTCCGGTCGCTCATGCACAAAAAACGCAAAGTGCACCGGGCACGCTTTCACCGGATGCGCGCAGTGAAGCGC
AGCCGTTTTATGGCGAACATCAGGCGGGTATTCTGACGCCGCAGCAGGCGGCAATGATGCTGGTGGCGTTTGATGTGCTT
GCCAGCGATAAAACCGATCTTGAACGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCGGC
ACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGTCCGATAATCTCACCA
TAACGTTATCGGTGGGCCATTCATTGTTTGATGAGCGGTTTGGCCTTACACCGCAGATGCCGAAAAAGTTGCAGAAAATG
ACGCGTTTCCCCAACGACTCGCTGGATGCGGCGTTATGTCATGGTGATGTGTTGCTACAAATTTGCGCCAACACCCAGGA
CACGGTGATCCATGCGCTGCGCGATATCATCAAACACACGCCGGATTTGCTCAGCGTGCGCTGGAAGCGGGAAGGGTTTA
TTTCCGATCACGCAGCGCGTAGTAAAGGCAAAGAGACGCCGATAAATTTGCTGGGTTTTAAAGACGGCACAGCCAATCCC
GATAGCCAGAATGCGAAGTTGATGCAAAAAGTGGTGTGGGTGACGGCAGATCAGCAGGAGCCTGCGTGGACAATCGGTGG
CAGCTATCAGGCGGTGCGGTTGATTCAGTTTCGGGTGGAGTTTTGGGACAGAACGCCACTGAAAGAACAGCAGACGATTT
TTGGTCGCGACAAACAAACTGGTGCGCCGCTGGGCATGCAGCACGAGCATGATGTTCCCGATTACGCCAGCGATCCGGAA
GGGAAGGTGATCGCGCTGGACAGCCATATTCGGCTGGCGAATCCCCGCACGCCAGAGAGTGAGTCAAGTCTGATGCTGCG
TCGTGGCTACAGTTATTCACTGGGCGTCACCAACTCCGGGCAACTCGATATGGGGCTACTGTTTGTCTGCTACCAACACG
ATCTGGAAAAGGGCTTCCTGACAGTACAAAAAAGGTTGAATGGCGAGGCGCTGGAGGAATATGTCAAACCTATCGGTGGC
GGCTATTTCTTTGCGCTGCCGGGTGTGAAGGACGCGAACGATTATCTCGGAAGCGCATTATTGCGGGTTTAA

Upstream 100 bases:

>100_bases
AATTGACCGATGCTGACCGTAATGCGCTGAAAGGGCCGATTACTGCGCTGGCGGAAGATCTGGCGCAACTTCGCGGTGTG
CTGGGGCTGGACTAAGCGTT

Downstream 100 bases:

>100_bases
TGTTTTTAGGCGTATAAGGCATTCGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCGGTGCG
GGTTCGGTAGGCTGAATAAG

Product: Tat-translocated enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MQYEDENGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPDARSEAQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKTDLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIASDNLTITLSVGHSLFDERFGLTPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNAKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKVIALDSHIRLANPRTPESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV

Sequences:

>Translated_423_residues
MQYEDENGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPDARSEAQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKTDLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIASDNLTITLSVGHSLFDERFGLTPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNAKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKVIALDSHIRLANPRTPESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV
>Mature_423_residues
MQYEDENGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPDARSEAQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKTDLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIASDNLTITLSVGHSLFDERFGLTPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNAKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKVIALDSHIRLANPRTPESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=423, Percent_Identity=97.6359338061466, Blast_Score=855, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 46628; Mature: 46628

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYEDENGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPDARSEAQPFYGEH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
QAGILTPQQAAMMLVAFDVLASDKTDLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GILGGYIASDNLTITLSVGHSLFDERFGLTPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ
CCCCCEEECCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
HHCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHCCCCCCCEEEEEECCCCCCC
DSQNAKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT
CCHHHHHHHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
GAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPRTPESESSLMLRRGYSYSLGVTNSG
CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHCCCCEEECCCCCC
QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYLGSAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
LRV
HCC
>Mature Secondary Structure
MQYEDENGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPDARSEAQPFYGEH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
QAGILTPQQAAMMLVAFDVLASDKTDLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GILGGYIASDNLTITLSVGHSLFDERFGLTPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ
CCCCCEEECCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
HHCCCHHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHCCCCCCCEEEEEECCCCCCC
DSQNAKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT
CCHHHHHHHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
GAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPRTPESESSLMLRRGYSYSLGVTNSG
CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHCCCCEEECCCCCC
QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYLGSAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
LRV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]