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The map label for this gene is ygiD [H]

Identifier: 170680476

GI number: 170680476

Start: 3413802

End: 3414590

Strand: Reverse

Name: ygiD [H]

Synonym: EcSMS35_3336

Alternate gene names: 170680476

Gene position: 3414590-3413802 (Counterclockwise)

Preceding gene: 170679608

Following gene: 170683347

Centisome position: 67.37

GC content: 54.12

Gene sequence:

>789_bases
ATGTCTTCAACACGTATGCCAGCATTGTTTTTAGGTCACGGTAGTCCGATGAACGTGCTGGAAGATAATTTGTATACCCG
CAGCTGGCAGACGTTGGGGATGACATTGCCACGCCCGCAAGCAATAGTGGTGGTTTCGGCTCACTGGTTTACCCGTGGAA
CAGGAGTGACCGCGATGGAGACGCCGCCCACGATTCATGACTTTGGTGGCTTCCCGCAGGCGCTGTACGATACGCATTAT
CCTGCTCCGGGTTCACCTGCGCTGGCACAGCATCTGGTTGAGCTGTTAGCGCCGGTCCCTGTGACGCTGGATAAAGAAGC
CTGGGGCTTCGACCACGGCTCGTGGGGCGTACTGATTAAGATGTATCCTGACGCCGATATCCCGATGGTGCAGTTGAGTA
TCGACAGTAGCAAACCTGCCGCCTGGCATTTCGAAATGGGGCGCAAACTCGCGGCGCTGCGTGATGAAGGGATAATGTTG
GTCGCCAGTGGCAACGTGGTGCATAACCTGCGTACAGTGAAGTGGCACGGTGATAGTTCACCGTATCCGTGGGCGACGTC
GTTTAATGAGTATGTGAAAGCGAATCTGACGTGGCAAGGGCCGGTGGAACAACATCCTCTGGTGAATTATCTCGACCATG
AAGGTGGCGCGTTATCGAACCCAACGCCAGAGCACTATCTGCCGTTGTTGTATGTCTTAGGTGCGTGGGATGGGCAGGAG
CCAATTACCATTCCGGTCGATGGTATAGAAATGGGCAGTTTAAGTATGCTGTCGGTGCAGATAGGTTAA

Upstream 100 bases:

>100_bases
AATAACTGATGATCATCATCATTGTTATCCGGGTTCTTACTCCGCCGAACAAGCGTATTGTGAGGATATCAAAATGACAC
CTTTAGTTAAGGATATCATC

Downstream 100 bases:

>100_bases
TAAAAGAACCCGAAGCCAGAATGACTGGCTTCGGGTGTTGCTGAGTTAGCCTCTGATGATTTTAAGTGCCCATGCGCCAC
TCATAATGACCAGCAGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQTLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHY
PAPGSPALAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYVLGAWDGQE
PITIPVDGIEMGSLSMLSVQIG

Sequences:

>Translated_262_residues
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQTLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHY
PAPGSPALAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYVLGAWDGQE
PITIPVDGIEMGSLSMLSVQIG
>Mature_261_residues
SSTRMPALFLGHGSPMNVLEDNLYTRSWQTLGMTLPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYP
APGSPALAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLV
ASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYVLGAWDGQEP
ITIPVDGIEMGSLSMLSVQIG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=98.0916030534351, Blast_Score=527, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28788; Mature: 28657

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTRMPALFLGHGSPMNVLEDNLYTRSWQTLGMTLPRPQAIVVVSAHWFTRGTGVTAME
CCCCCCCEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCEEEEEEEEEEECCCCCEEEC
TPPTIHDFGGFPQALYDTHYPAPGSPALAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIK
CCCCHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCHHCCCCCCCCEEEEE
MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS
ECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEEEEEECCCCC
PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYVLGAWDGQE
CCCCCCCCCHHEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEEEEECCCCCC
PITIPVDGIEMGSLSMLSVQIG
CEEEEECCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SSTRMPALFLGHGSPMNVLEDNLYTRSWQTLGMTLPRPQAIVVVSAHWFTRGTGVTAME
CCCCCCEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCEEEEEEEEEEECCCCCEEEC
TPPTIHDFGGFPQALYDTHYPAPGSPALAQHLVELLAPVPVTLDKEAWGFDHGSWGVLIK
CCCCHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCHHCCCCCCCCEEEEE
MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWHGDSS
ECCCCCCCEEEEEECCCCCCEEEHHHCCCEEEECCCCEEEEECCCEEEEEEEEEECCCCC
PYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGALSNPTPEHYLPLLYVLGAWDGQE
CCCCCCCCCHHEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHEEEEEEECCCCCC
PITIPVDGIEMGSLSMLSVQIG
CEEEEECCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]