Click here to switch to the map view.

The map label for this gene is asnC [H]

Identifier: 170680155

GI number: 170680155

Start: 4206344

End: 4206802

Strand: Reverse

Name: asnC [H]

Synonym: EcSMS35_4111

Alternate gene names: 170680155

Gene position: 4206802-4206344 (Counterclockwise)

Preceding gene: 170683973

Following gene: 170683215

Centisome position: 83.0

GC content: 49.24

Gene sequence:

>459_bases
ATGGAAAATTATCTGATCGACAATCTGGACCGCGGCATCCTGGAAGCATTAATGGAAAATGCACGCACTGCTTACGCCGA
ACTGGCGAAACAATTTGGTGTAAGCCCGGGGACGATTCACGTTCGTGTAGAGAAAATGAAGCAGGCGGGAATCATTACAG
GGGCGCGTATTGACGTCAGCCCGAAACAGCTCGGTTATGACGTAGGCTGCTTTATCGGCATTATATTGAAGAGTGCCAAA
GACTATCCTTCCGCGCTGGCAAAGCTGGAAAGCCTTGATGAAGTCACCGAGGCCTACTACACCACCGGCCACTACAGCAT
CTTTATCAAAGTGATGTGCCGTTCGATCGACGCCCTCCAGCATGTACTTATCAACAAGATCCAAACAATTGATGAAATTC
AGTCCACCGAGACACTGATCGTCCTGCAAAACCCGATCATGCGTACCATCAAGCCATGA

Upstream 100 bases:

>100_bases
CTCATGCAATATTCATTCAATAAAAAGCCATAGTGACTTTTGATTCATTAAAAAATAAGGCTAAAATAGAGTGAATCATT
AATTCTCATAAGAAAAACCT

Downstream 100 bases:

>100_bases
TCGGCTTTTTTAATCCCATACTTTTCCACAGGTAGATCCCAGCGCGTTCACAGCGTACAATACGCCACTCTTAATAAAGG
TGGCGGTTTATGGCAGATAT

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MENYLIDNLDRGILEALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAK
DYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP

Sequences:

>Translated_152_residues
MENYLIDNLDRGILEALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAK
DYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP
>Mature_152_residues
MENYLIDNLDRGILEALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAK
DYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=152, Percent_Identity=99.3421052631579, Blast_Score=310, Evalue=3e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16960; Mature: 16960

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENYLIDNLDRGILEALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVS
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCEECCEECCC
PKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQ
HHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HVLINKIQTIDEIQSTETLIVLQNPIMRTIKP
HHHHHHHHHHHHHHCCCEEEEECCCHHHHCCC
>Mature Secondary Structure
MENYLIDNLDRGILEALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVS
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCEECCEECCC
PKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQ
HHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
HVLINKIQTIDEIQSTETLIVLQNPIMRTIKP
HHHHHHHHHHHHHHCCCEEEEECCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]