Click here to switch to the map view.

The map label for this gene is kdsD [H]

Identifier: 170680141

GI number: 170680141

Start: 3031920

End: 3032516

Strand: Reverse

Name: kdsD [H]

Synonym: EcSMS35_2959

Alternate gene names: 170680141

Gene position: 3032516-3031920 (Counterclockwise)

Preceding gene: 170682367

Following gene: 170684118

Centisome position: 59.83

GC content: 43.72

Gene sequence:

>597_bases
ATGAACAGCACGGATCTTATCCATCTCATTAAACATTTTATGCGTAACGAACATAAAGCAGTTGAAGAAGTTATTGATTC
CCCCCTTTCGGAGGTCGCAAATTTAATTAAAGTATTACAGTCTTGTCAGGGGAAAGTTGTTTTTATTGGTGTCGGTAAGT
CCGGTATTATTGCCCGAAAACTCGCCGCAACATTTGCCAGCACTGGAACTCCCTCGTTTTTTGTTCACGGTACGGAAGCG
GTACACGGCGACCTTGGAATGGTGGCGAAAGACGATGTTGTTATTCTTATTTCAAACAGTGGTGAGACGGCGGAAATCCT
GGCGACACTGCCTAGTCTGAAAAAAATGGGTAATTATTTGATCTCTTTTACACGCAGTCATCACTCATCGCTTGCGATAA
GTTGTGATTTATCCGTTGAAATTCCCGTAAAAAGTGAGGCGGATAATTTAGGTTTAGCGCCGTCATGCTCATCAACAGTC
GTTCTGGTTGTTGGTGATGCGGTGGCGCTTGCGCTCTCCGAATTGAAAAAGTTTACTCGTGCTGATTTCGGCTTATATCA
TCCAGGAGGTGCGCTCGGTATTAAAGCAAACTCATAA

Upstream 100 bases:

>100_bases
GCTACCTTCGTCTGAACCTGGCCTGCGGTCGAGAAAAATTATATATGGGGCTTACGCGTCTTGCGAGTGTAATTAAAAAT
ATTAATCAAGGAAAATAAAA

Downstream 100 bases:

>100_bases
TTTCAAAATATAAATACAGTAACCGGTCACGCCATCTTTTGGGGTGGCGTTCTTTGAAGTGAGTGTCAGCTATGAAAAAT
GTTCTGGTCACCGTCCCCAG

Product: KpsF/GutQ family sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MNSTDLIHLIKHFMRNEHKAVEEVIDSPLSEVANLIKVLQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTV
VLVVGDAVALALSELKKFTRADFGLYHPGGALGIKANS

Sequences:

>Translated_198_residues
MNSTDLIHLIKHFMRNEHKAVEEVIDSPLSEVANLIKVLQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTV
VLVVGDAVALALSELKKFTRADFGLYHPGGALGIKANS
>Mature_198_residues
MNSTDLIHLIKHFMRNEHKAVEEVIDSPLSEVANLIKVLQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTV
VLVVGDAVALALSELKKFTRADFGLYHPGGALGIKANS

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=154, Percent_Identity=59.0909090909091, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI87082151, Length=154, Percent_Identity=44.8051948051948, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 20856; Mature: 20856

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTDLIHLIKHFMRNEHKAVEEVIDSPLSEVANLIKVLQSCQGKVVFIGVGKSGIIARK
CCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
LAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYL
HHHHHHCCCCCEEEEECCHHCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTVVLVVGDAVALALSELKKFTR
HHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
ADFGLYHPGGALGIKANS
HCCCEECCCCEEEEEECC
>Mature Secondary Structure
MNSTDLIHLIKHFMRNEHKAVEEVIDSPLSEVANLIKVLQSCQGKVVFIGVGKSGIIARK
CCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
LAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYL
HHHHHHCCCCCEEEEECCHHCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ISFTRSHHSSLAISCDLSVEIPVKSEADNLGLAPSCSSTVVLVVGDAVALALSELKKFTR
HHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
ADFGLYHPGGALGIKANS
HCCCEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]