| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079284
Identifier: 170079284
GI number: 170079284
Start: 2820684
End: 2821985
Strand: Reverse
Name: 170079284
Synonym: SYNPCC7002_A2691
Alternate gene names: NA
Gene position: 2821985-2820684 (Counterclockwise)
Preceding gene: 170079285
Following gene: 170079281
Centisome position: 93.81
GC content: 48.85
Gene sequence:
>1302_bases GTGACGAAAGTAACTCCCATCGCCTCTTATCTCCGGCAAACCAATTCCGCCGAACAAGAGCTATATGACTATTTGATGCA CGCCGTCCAGAGCCATACCCCCGATGAGCTGCTCCAAGAATTCAAGCAATTTCTCCTTGAAGGACGCCAAGCGCCGACCC CCGAACTACACCAGGCCCTAATCACTATCCTCAAAACCCCCGGTGTCGAAGAAGATTTTAAATTCATTCTGAACCGCTGC TGCCACATCATTATCAACCGCTGGCAAATCCACCCCCAGCTTCAAAAATCGATCCCTCGGTTGGTTAAACTGTTTGACTC TATCCCGCCGCCGAGCCTTTCGACGCCCCGCCTGACGAAATTACATCGCCAATTAGTGGCGGACTTTAGTACCTCCGAAC AATATCTCACCCTGCAACGTTTGGCGCGGGTGGTAGAAGACGACGACAGTAAAAAGAAATTTACCTGGAATGACCAAAGC GTTTCGGTAGGCCAATTAATTCAACGCTATCCCTATCTGTATGAACACTGCCTGCTCAGTGAAGATAGCAGCTTTGAACA CCAGCAGACCGTCCGTCAGGTGCAAGCGAGAATTCAACGGGCCTTTGAGTTAGACCTTTCTAAATATGTCATGTATCAGG TGCGTTTGGCTCAGTTAGCTCGCCGTAAGCATTCGATTCAGGATGCTAAACAAATGCTCCAGGGGGTGCAAAATCCTACC CTACTCACGGAGCGAGAGTTGGGAACGGCCCTGAAATATTTTGTGGGGAAACCGGAGCGGGGCCACAGCTACCGGGACTT ATCCCAATATTTTTTACGCCGGACGACGGAAATTCTCTCCTACGAAGACTTTAAGCATGAGCTATTTAGCTACTTAATTT CTAGCGTCGATCAAAAGTATGGCAAGTTGCAGTTTAACCAGAGGCTCTACCAAAAGCTGCAAACCATGTTGCCGAACTAC GATCACCAAAAACCCAATGAGTTGTTGATGATGCGTACGGCCAGTCAACTGCTCAATTATCTCATTGTGGAAAGTCCCCA GCGGCCGGAGCATTACGTTTTTGTAGATATGATCACGAACCTTGGCCCGACGGTGACGGTGGCATTGCTCCTGAAGTTGG TCTTGATGTGCGGTAAGGCGAAACCCCACCTCGAAAGGCGCTTTTCAATTCTCTTCAGCCACTACGAATCCCAATCCCAA GAGGGGGTACCTTGGTTGATCAAATCCTTAGAAAACCTCCACATTGCCCTCAGTGTGCATTTTGGTGATGCGGATGTGTC GTTTCTCAAGCAAATTATGTAA
Upstream 100 bases:
>100_bases TTAAGATAGAAAAAAATCAGTCTCCCCTAAATCTAATAGCTCTCCTCTGTCGTCCCTCGCCTTGTAATCAGCCTATCCCT TACCCAGTTCCTCGATTAGC
Downstream 100 bases:
>100_bases AGGGATTTACGATTACTTGCGGTGTTTAGGGGATTTTTCCGGAGTTTGGGGATGTTGCACGACCAGAACGGAACAGGGTG CATGGTGGAGTACGTAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MTKVTPIASYLRQTNSAEQELYDYLMHAVQSHTPDELLQEFKQFLLEGRQAPTPELHQALITILKTPGVEEDFKFILNRC CHIIINRWQIHPQLQKSIPRLVKLFDSIPPPSLSTPRLTKLHRQLVADFSTSEQYLTLQRLARVVEDDDSKKKFTWNDQS VSVGQLIQRYPYLYEHCLLSEDSSFEHQQTVRQVQARIQRAFELDLSKYVMYQVRLAQLARRKHSIQDAKQMLQGVQNPT LLTERELGTALKYFVGKPERGHSYRDLSQYFLRRTTEILSYEDFKHELFSYLISSVDQKYGKLQFNQRLYQKLQTMLPNY DHQKPNELLMMRTASQLLNYLIVESPQRPEHYVFVDMITNLGPTVTVALLLKLVLMCGKAKPHLERRFSILFSHYESQSQ EGVPWLIKSLENLHIALSVHFGDADVSFLKQIM
Sequences:
>Translated_433_residues MTKVTPIASYLRQTNSAEQELYDYLMHAVQSHTPDELLQEFKQFLLEGRQAPTPELHQALITILKTPGVEEDFKFILNRC CHIIINRWQIHPQLQKSIPRLVKLFDSIPPPSLSTPRLTKLHRQLVADFSTSEQYLTLQRLARVVEDDDSKKKFTWNDQS VSVGQLIQRYPYLYEHCLLSEDSSFEHQQTVRQVQARIQRAFELDLSKYVMYQVRLAQLARRKHSIQDAKQMLQGVQNPT LLTERELGTALKYFVGKPERGHSYRDLSQYFLRRTTEILSYEDFKHELFSYLISSVDQKYGKLQFNQRLYQKLQTMLPNY DHQKPNELLMMRTASQLLNYLIVESPQRPEHYVFVDMITNLGPTVTVALLLKLVLMCGKAKPHLERRFSILFSHYESQSQ EGVPWLIKSLENLHIALSVHFGDADVSFLKQIM >Mature_432_residues TKVTPIASYLRQTNSAEQELYDYLMHAVQSHTPDELLQEFKQFLLEGRQAPTPELHQALITILKTPGVEEDFKFILNRCC HIIINRWQIHPQLQKSIPRLVKLFDSIPPPSLSTPRLTKLHRQLVADFSTSEQYLTLQRLARVVEDDDSKKKFTWNDQSV SVGQLIQRYPYLYEHCLLSEDSSFEHQQTVRQVQARIQRAFELDLSKYVMYQVRLAQLARRKHSIQDAKQMLQGVQNPTL LTERELGTALKYFVGKPERGHSYRDLSQYFLRRTTEILSYEDFKHELFSYLISSVDQKYGKLQFNQRLYQKLQTMLPNYD HQKPNELLMMRTASQLLNYLIVESPQRPEHYVFVDMITNLGPTVTVALLLKLVLMCGKAKPHLERRFSILFSHYESQSQE GVPWLIKSLENLHIALSVHFGDADVSFLKQIM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50756; Mature: 50625
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVTPIASYLRQTNSAEQELYDYLMHAVQSHTPDELLQEFKQFLLEGRQAPTPELHQAL CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH ITILKTPGVEEDFKFILNRCCHIIINRWQIHPQLQKSIPRLVKLFDSIPPPSLSTPRLTK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LHRQLVADFSTSEQYLTLQRLARVVEDDDSKKKFTWNDQSVSVGQLIQRYPYLYEHCLLS HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCC EDSSFEHQQTVRQVQARIQRAFELDLSKYVMYQVRLAQLARRKHSIQDAKQMLQGVQNPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LLTERELGTALKYFVGKPERGHSYRDLSQYFLRRTTEILSYEDFKHELFSYLISSVDQKY CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKLQFNQRLYQKLQTMLPNYDHQKPNELLMMRTASQLLNYLIVESPQRPEHYVFVDMITN HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHC LGPTVTVALLLKLVLMCGKAKPHLERRFSILFSHYESQSQEGVPWLIKSLENLHIALSVH CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEE FGDADVSFLKQIM ECCCHHHHHHHHC >Mature Secondary Structure TKVTPIASYLRQTNSAEQELYDYLMHAVQSHTPDELLQEFKQFLLEGRQAPTPELHQAL CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH ITILKTPGVEEDFKFILNRCCHIIINRWQIHPQLQKSIPRLVKLFDSIPPPSLSTPRLTK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LHRQLVADFSTSEQYLTLQRLARVVEDDDSKKKFTWNDQSVSVGQLIQRYPYLYEHCLLS HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCC EDSSFEHQQTVRQVQARIQRAFELDLSKYVMYQVRLAQLARRKHSIQDAKQMLQGVQNPT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LLTERELGTALKYFVGKPERGHSYRDLSQYFLRRTTEILSYEDFKHELFSYLISSVDQKY CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKLQFNQRLYQKLQTMLPNYDHQKPNELLMMRTASQLLNYLIVESPQRPEHYVFVDMITN HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHC LGPTVTVALLLKLVLMCGKAKPHLERRFSILFSHYESQSQEGVPWLIKSLENLHIALSVH CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEE FGDADVSFLKQIM ECCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7894708; 8905231 [H]