Click here to switch to the map view.

The map label for this gene is synA [H]

Identifier: 170079204

GI number: 170079204

Start: 2738845

End: 2741157

Strand: Reverse

Name: synA [H]

Synonym: SYNPCC7002_A2610

Alternate gene names: 170079204

Gene position: 2741157-2738845 (Counterclockwise)

Preceding gene: 170079205

Following gene: 170079203

Centisome position: 91.13

GC content: 53.87

Gene sequence:

>2313_bases
ATGACTTCCCGTTCTCTTTCTCCCGAATCGCGCCTTGCGCCACAAACCACGACGACCTTTGATGTTCAGGGGATGCGTTG
TGCGGGTTGTGTCAAGGCCGTAGAACGCCAGTTAACGCAGCAGTCTGGGGTGCTTTCGGCGGTGGTGAATCTGATTACGG
AGGTGGCGGTGGTCACCTATGAACCAGAAAAAATTCAACCAGAGGCGATCGCCAACCGTTTATCCCAAGCGGGCTTTCCT
AGCGAACCCCGAACCACAGAAGTCGAAACCTTTAACCAATACCAAGAAAAACGCGCCCAATCCCAGCGGGAACAATATTG
GCGTTTGGGGGCGGCGATTGTCTTGCTCCTCGCGTCGAGCCTGGGCCATTTGCATCATCTGACGGGCCTGAAAATTCCTC
TGCTTCATTTGATGGGTGTCCATTGGGCGATCGCCACCTTGGCCTTATTTATTCCGGGGTTGCCGATTTTGCGGGACGGC
TGGACAGGGCTGATTAAAGGCCATGCCAATATGAATACTCTGGTGGGTCTCGGAACATTGAGCGCCTACCTGACAAGCTG
TGTGGCTTGGCTGATGCCCCAGTTGGGTTGGGAATGTTTCTTTGATGAACCGGTGATGTTACTGGGTTTTATCTTCCTTG
GCCGCACCCTCGAAGGTAATGCCAGACTCAAGGCGATCGCCGCCCTCGAATCCCTCCTCGCTCTGCAACCCCAGGGGGCG
CGCCTGATGGGTCGAGAACAAAAGGGCGAAACCGAAGAAATTACAATTCCCGTGGCCCAGGTACAGATTGGCGAATGGGT
GCGCATTTTACCCGGCGAAAAAATTCCCGTGGATGGAGCGATTATTCGCGGTGAAACCACTGTGGATGAATCGATGTTGA
CGGGGGAAGCGCTGCCCCAGGAAAAAACGGTCGGCGCATCGGTGAAGGCCGGCACCCTCAATCAACTGGGGGTGATCATT
GTGCAAGCCACCCAAACGGCCCAAAATACGATGCTCGCCCAGATTATTCGCACCGTAGAGGCGGCCCAGACCCGCAAGGC
TCCCGTGCAAAAAATGGCAGATACCATTGCGGGATATTTTGCCTATGGGGTGATGGCTTTGGCGGTGTTGGTCTTTTTAT
TTTGGGAGCTGATCGGTAGCCAACTCTGGTTAGATCCAGGGGCGACGAACCCAGAAATATTAAGCCTGAAATTGGCGATC
GCCGTTTTGGTGGTGGCCTGTCCCTGTGCCTTGGGGTTAGCGACGCCCACGGCTCTCCTGGTGGGGACAAGTCTTGGGGC
TGAGCAGGGCATTTTAATCAAAGGGGGGGATATCCTCGAACGCCTCAATCAACTGACCACCGTTGTTTTTGATAAAACAG
GCACCCTCACCCAGGGCAAACCGCAGATTGTCGAGTGGGTTAGCTTTGCCCCTTGGTCGCAAGATTCCCTGCTGCAATGG
GCCGCGAGCCTGGAACAGCGCAGCACCCATCCCTATGGCCAAGCCTTTGTGGCGATCGCCCAACAGCAAAACCAAGAACT
CTTTGCCCCTGATCAGGTTGAAACCGCTTTGGGTAAAGGCATTGTCGGTCAAGTGAATGGCCAGTCGGTACATATTGGCA
ACCAAGCCTGGCTTGAGACCGCCCAAATTACAATCCCGGAAGCCTGCCATCACCATCTCGAAACCTGGTCAGCCACGGGC
AAAACCACCATTTTTATTGCCATCGATCACCAGGTGGCTGGTTTATTGGCGATCGCCGATCCAATTCGTCCCGATGCCGC
CGCCTTGATCGAAAATCTACGCGCCAGAAATCTAGAAGTAATCCTCCTCAGTGGCGATCAAGCGCCCGTCGTCAAAAATC
TCGCTCAAACTCTCCAGCTTGATCATTATCAAGGTGCCCTTTCCCCCATCGAAAAAGCCGCCACACTCCGCACCCTCCAG
GCTCAACAAAAAGTAGTCGCGATGATCGGTGATGGCATTAACGACGCGCCAGCCCTCGCCACCGCCGATATTGGCATTTC
CCTCCAGGGGAGTACTGATGTTGCCCTCGCCACCGCCGACATTATCCTCATGGGCGATCGCCTGATGGATTTTGAGCAAA
CCCTTCATCTGAGCCAAGCGACCGTCAAAGTGATCTACCAGAATTTGATCTGGGCCTTTGGCTATAACCTCATCGCAATT
CCCCTCGCCGCAGGGATTCTCTTGCCGCAATTTAACTTCACCCTCAGTCCCGCTGTGGCCGCAGGCTTAATGGCCATGAG
TTCTGTATTAGTTGTGACGAATTCTCTCACCTTGAAAAAATCGTTCCAAAAAACAAATCAAAATCCTCAATAA

Upstream 100 bases:

>100_bases
TATGGCGACCCTATGCTGCAAACAACGGTAATAATCAGCCCTGGGACGAAAAATTTTTGGCATACTCAGGGGACAGCCTG
TTGCAGTTGGGGCCTTTGGT

Downstream 100 bases:

>100_bases
AGCCTCACATCAATATTTTTAAACCACTAGACTCGCCTCTGAATATTCATTCCATAATGAATGCGGTGTCAAATAGAATT
AAATATTTATCATGCTTAAA

Product: cation-transporting P-type ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 769

Protein sequence:

>770_residues
MTSRSLSPESRLAPQTTTTFDVQGMRCAGCVKAVERQLTQQSGVLSAVVNLITEVAVVTYEPEKIQPEAIANRLSQAGFP
SEPRTTEVETFNQYQEKRAQSQREQYWRLGAAIVLLLASSLGHLHHLTGLKIPLLHLMGVHWAIATLALFIPGLPILRDG
WTGLIKGHANMNTLVGLGTLSAYLTSCVAWLMPQLGWECFFDEPVMLLGFIFLGRTLEGNARLKAIAALESLLALQPQGA
RLMGREQKGETEEITIPVAQVQIGEWVRILPGEKIPVDGAIIRGETTVDESMLTGEALPQEKTVGASVKAGTLNQLGVII
VQATQTAQNTMLAQIIRTVEAAQTRKAPVQKMADTIAGYFAYGVMALAVLVFLFWELIGSQLWLDPGATNPEILSLKLAI
AVLVVACPCALGLATPTALLVGTSLGAEQGILIKGGDILERLNQLTTVVFDKTGTLTQGKPQIVEWVSFAPWSQDSLLQW
AASLEQRSTHPYGQAFVAIAQQQNQELFAPDQVETALGKGIVGQVNGQSVHIGNQAWLETAQITIPEACHHHLETWSATG
KTTIFIAIDHQVAGLLAIADPIRPDAAALIENLRARNLEVILLSGDQAPVVKNLAQTLQLDHYQGALSPIEKAATLRTLQ
AQQKVVAMIGDGINDAPALATADIGISLQGSTDVALATADIILMGDRLMDFEQTLHLSQATVKVIYQNLIWAFGYNLIAI
PLAAGILLPQFNFTLSPAVAAGLMAMSSVLVVTNSLTLKKSFQKTNQNPQ

Sequences:

>Translated_770_residues
MTSRSLSPESRLAPQTTTTFDVQGMRCAGCVKAVERQLTQQSGVLSAVVNLITEVAVVTYEPEKIQPEAIANRLSQAGFP
SEPRTTEVETFNQYQEKRAQSQREQYWRLGAAIVLLLASSLGHLHHLTGLKIPLLHLMGVHWAIATLALFIPGLPILRDG
WTGLIKGHANMNTLVGLGTLSAYLTSCVAWLMPQLGWECFFDEPVMLLGFIFLGRTLEGNARLKAIAALESLLALQPQGA
RLMGREQKGETEEITIPVAQVQIGEWVRILPGEKIPVDGAIIRGETTVDESMLTGEALPQEKTVGASVKAGTLNQLGVII
VQATQTAQNTMLAQIIRTVEAAQTRKAPVQKMADTIAGYFAYGVMALAVLVFLFWELIGSQLWLDPGATNPEILSLKLAI
AVLVVACPCALGLATPTALLVGTSLGAEQGILIKGGDILERLNQLTTVVFDKTGTLTQGKPQIVEWVSFAPWSQDSLLQW
AASLEQRSTHPYGQAFVAIAQQQNQELFAPDQVETALGKGIVGQVNGQSVHIGNQAWLETAQITIPEACHHHLETWSATG
KTTIFIAIDHQVAGLLAIADPIRPDAAALIENLRARNLEVILLSGDQAPVVKNLAQTLQLDHYQGALSPIEKAATLRTLQ
AQQKVVAMIGDGINDAPALATADIGISLQGSTDVALATADIILMGDRLMDFEQTLHLSQATVKVIYQNLIWAFGYNLIAI
PLAAGILLPQFNFTLSPAVAAGLMAMSSVLVVTNSLTLKKSFQKTNQNPQ
>Mature_769_residues
TSRSLSPESRLAPQTTTTFDVQGMRCAGCVKAVERQLTQQSGVLSAVVNLITEVAVVTYEPEKIQPEAIANRLSQAGFPS
EPRTTEVETFNQYQEKRAQSQREQYWRLGAAIVLLLASSLGHLHHLTGLKIPLLHLMGVHWAIATLALFIPGLPILRDGW
TGLIKGHANMNTLVGLGTLSAYLTSCVAWLMPQLGWECFFDEPVMLLGFIFLGRTLEGNARLKAIAALESLLALQPQGAR
LMGREQKGETEEITIPVAQVQIGEWVRILPGEKIPVDGAIIRGETTVDESMLTGEALPQEKTVGASVKAGTLNQLGVIIV
QATQTAQNTMLAQIIRTVEAAQTRKAPVQKMADTIAGYFAYGVMALAVLVFLFWELIGSQLWLDPGATNPEILSLKLAIA
VLVVACPCALGLATPTALLVGTSLGAEQGILIKGGDILERLNQLTTVVFDKTGTLTQGKPQIVEWVSFAPWSQDSLLQWA
ASLEQRSTHPYGQAFVAIAQQQNQELFAPDQVETALGKGIVGQVNGQSVHIGNQAWLETAQITIPEACHHHLETWSATGK
TTIFIAIDHQVAGLLAIADPIRPDAAALIENLRARNLEVILLSGDQAPVVKNLAQTLQLDHYQGALSPIEKAATLRTLQA
QQKVVAMIGDGINDAPALATADIGISLQGSTDVALATADIILMGDRLMDFEQTLHLSQATVKVIYQNLIWAFGYNLIAIP
LAAGILLPQFNFTLSPAVAAGLMAMSSVLVVTNSLTLKKSFQKTNQNPQ

Specific function: Involved in copper transport [H]

COG id: COG2217

COG function: function code P; Cation transport ATPase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HMA domain [H]

Homologues:

Organism=Homo sapiens, GI55743071, Length=782, Percent_Identity=32.9923273657289, Blast_Score=392, Evalue=1e-109,
Organism=Homo sapiens, GI55743073, Length=559, Percent_Identity=32.737030411449, Blast_Score=298, Evalue=9e-81,
Organism=Homo sapiens, GI115529486, Length=541, Percent_Identity=33.456561922366, Blast_Score=270, Evalue=5e-72,
Organism=Escherichia coli, GI1786691, Length=771, Percent_Identity=36.1867704280156, Blast_Score=418, Evalue=1e-118,
Organism=Escherichia coli, GI1789879, Length=708, Percent_Identity=30.225988700565, Blast_Score=252, Evalue=8e-68,
Organism=Escherichia coli, GI1786914, Length=473, Percent_Identity=25.7928118393235, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI2367363, Length=150, Percent_Identity=32, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17556548, Length=799, Percent_Identity=32.9161451814768, Blast_Score=377, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6320475, Length=646, Percent_Identity=33.9009287925697, Blast_Score=339, Evalue=1e-93,
Organism=Saccharomyces cerevisiae, GI6319772, Length=628, Percent_Identity=29.6178343949045, Blast_Score=259, Evalue=2e-69,
Organism=Saccharomyces cerevisiae, GI6325221, Length=526, Percent_Identity=23.9543726235741, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321430, Length=525, Percent_Identity=23.4285714285714, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321271, Length=157, Percent_Identity=30.5732484076433, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221329854, Length=521, Percent_Identity=35.3166986564299, Blast_Score=270, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008250
- InterPro:   IPR006403
- InterPro:   IPR006416
- InterPro:   IPR001757
- InterPro:   IPR018303
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR017969
- InterPro:   IPR006121
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]

EC number: =3.6.3.4 [H]

Molecular weight: Translated: 82878; Mature: 82747

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS00154 ATPASE_E1_E2 ; PS01047 HMA_1 ; PS50846 HMA_2 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRSLSPESRLAPQTTTTFDVQGMRCAGCVKAVERQLTQQSGVLSAVVNLITEVAVVTY
CCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEE
EPEKIQPEAIANRLSQAGFPSEPRTTEVETFNQYQEKRAQSQREQYWRLGAAIVLLLASS
CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGHLHHLTGLKIPLLHLMGVHWAIATLALFIPGLPILRDGWTGLIKGHANMNTLVGLGTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEECCCCCHHHHHHHHH
SAYLTSCVAWLMPQLGWECFFDEPVMLLGFIFLGRTLEGNARLKAIAALESLLALQPQGA
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
RLMGREQKGETEEITIPVAQVQIGEWVRILPGEKIPVDGAIIRGETTVDESMLTGEALPQ
HHCCCCCCCCCCEEEEEHHHEECCCCCEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCC
EKTVGASVKAGTLNQLGVIIVQATQTAQNTMLAQIIRTVEAAQTRKAPVQKMADTIAGYF
CCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGVMALAVLVFLFWELIGSQLWLDPGATNPEILSLKLAIAVLVVACPCALGLATPTALL
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VGTSLGAEQGILIKGGDILERLNQLTTVVFDKTGTLTQGKPQIVEWVSFAPWSQDSLLQW
EECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
AASLEQRSTHPYGQAFVAIAQQQNQELFAPDQVETALGKGIVGQVNGQSVHIGNQAWLET
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCEEEECCHHHHHH
AQITIPEACHHHLETWSATGKTTIFIAIDHQVAGLLAIADPIRPDAAALIENLRARNLEV
HHEECCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
ILLSGDQAPVVKNLAQTLQLDHYQGALSPIEKAATLRTLQAQQKVVAMIGDGINDAPALA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
TADIGISLQGSTDVALATADIILMGDRLMDFEQTLHLSQATVKVIYQNLIWAFGYNLIAI
EECCCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
PLAAGILLPQFNFTLSPAVAAGLMAMSSVLVVTNSLTLKKSFQKTNQNPQ
HHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSRSLSPESRLAPQTTTTFDVQGMRCAGCVKAVERQLTQQSGVLSAVVNLITEVAVVTY
CCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEE
EPEKIQPEAIANRLSQAGFPSEPRTTEVETFNQYQEKRAQSQREQYWRLGAAIVLLLASS
CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGHLHHLTGLKIPLLHLMGVHWAIATLALFIPGLPILRDGWTGLIKGHANMNTLVGLGTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEECCCCCHHHHHHHHH
SAYLTSCVAWLMPQLGWECFFDEPVMLLGFIFLGRTLEGNARLKAIAALESLLALQPQGA
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
RLMGREQKGETEEITIPVAQVQIGEWVRILPGEKIPVDGAIIRGETTVDESMLTGEALPQ
HHCCCCCCCCCCEEEEEHHHEECCCCCEECCCCCCCCCCEEEECCCCHHHHHHCCCCCCC
EKTVGASVKAGTLNQLGVIIVQATQTAQNTMLAQIIRTVEAAQTRKAPVQKMADTIAGYF
CCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGVMALAVLVFLFWELIGSQLWLDPGATNPEILSLKLAIAVLVVACPCALGLATPTALL
HHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VGTSLGAEQGILIKGGDILERLNQLTTVVFDKTGTLTQGKPQIVEWVSFAPWSQDSLLQW
EECCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHH
AASLEQRSTHPYGQAFVAIAQQQNQELFAPDQVETALGKGIVGQVNGQSVHIGNQAWLET
HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCEEEECCHHHHHH
AQITIPEACHHHLETWSATGKTTIFIAIDHQVAGLLAIADPIRPDAAALIENLRARNLEV
HHEECCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE
ILLSGDQAPVVKNLAQTLQLDHYQGALSPIEKAATLRTLQAQQKVVAMIGDGINDAPALA
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
TADIGISLQGSTDVALATADIILMGDRLMDFEQTLHLSQATVKVIYQNLIWAFGYNLIAI
EECCCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
PLAAGILLPQFNFTLSPAVAAGLMAMSSVLVVTNSLTLKKSFQKTNQNPQ
HHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7937823 [H]