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The map label for this gene is 170079180

Identifier: 170079180

GI number: 170079180

Start: 2706475

End: 2706912

Strand: Direct

Name: 170079180

Synonym: SYNPCC7002_A2586

Alternate gene names: NA

Gene position: 2706475-2706912 (Clockwise)

Preceding gene: 170079178

Following gene: 170079181

Centisome position: 89.97

GC content: 53.42

Gene sequence:

>438_bases
ATGCTCAATCCTTTAATGATCTGGTTAATTATTGGCGCGGTGCTTTGCTCCCTAGAGTTTATTTTTCCCACCGCCTTCAT
GGAGTTTATGCTAGGGCTTGGAGCCGTGGCCGTGGCCGTCATTGTGTATCTCGTTCCGAGCCTAGATCCCAATGTGCAGA
TTTTTTTGTGGTTGCTGTTTTCGACCATCGCCATTGTGAGTTCCCGCCGTTTTTTTACCCCCAAAACTTCCATACGGACC
ATCAGTGATGCTGCCGATGCCGAAACCCTAACGGCGATCGCCCCCGGTGAAGCTGGCCGCGTTTTGTACGAAGGCAACTC
CTGGCGAGCCCGCTGCGCCGACGAAACCGTCACCATTGATCCCCACCAGACCGTTTATGTGCTACGTCGGGAAGGCACAA
CCTTGATTGTCATGCCCCGGCATCTCCTTGAACCCTAG

Upstream 100 bases:

>100_bases
TCAAGCTATGATGAAGTCAGCGGTCAATGGTGCTGACCCACGGAGGCCATCCCTGATCGAATTATATGGCGAAAAATCCC
CAGTATTAGGGTCTCGGTGA

Downstream 100 bases:

>100_bases
GCCCATGTCCCCAACTCAGAAGAGGTTTAGTTAAGCTCAGTTAACCTGTAAGCAATTCTATAATTTGAGAAGTTTTTCAC
CGATAAAATACATTTAGATT

Product: nodulation efficiency protein D (NfeD)

Products: NA

Alternate protein names: Nodulation Efficiency Family Protein; Nodulation Efficiency Protein NfeD

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLNPLMIWLIIGAVLCSLEFIFPTAFMEFMLGLGAVAVAVIVYLVPSLDPNVQIFLWLLFSTIAIVSSRRFFTPKTSIRT
ISDAADAETLTAIAPGEAGRVLYEGNSWRARCADETVTIDPHQTVYVLRREGTTLIVMPRHLLEP

Sequences:

>Translated_145_residues
MLNPLMIWLIIGAVLCSLEFIFPTAFMEFMLGLGAVAVAVIVYLVPSLDPNVQIFLWLLFSTIAIVSSRRFFTPKTSIRT
ISDAADAETLTAIAPGEAGRVLYEGNSWRARCADETVTIDPHQTVYVLRREGTTLIVMPRHLLEP
>Mature_145_residues
MLNPLMIWLIIGAVLCSLEFIFPTAFMEFMLGLGAVAVAVIVYLVPSLDPNVQIFLWLLFSTIAIVSSRRFFTPKTSIRT
ISDAADAETLTAIAPGEAGRVLYEGNSWRARCADETVTIDPHQTVYVLRREGTTLIVMPRHLLEP

Specific function: Unknown

COG id: COG1585

COG function: function code OU; Membrane protein implicated in regulation of membrane protease activity

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16096; Mature: 16096

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPLMIWLIIGAVLCSLEFIFPTAFMEFMLGLGAVAVAVIVYLVPSLDPNVQIFLWLLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
STIAIVSSRRFFTPKTSIRTISDAADAETLTAIAPGEAGRVLYEGNSWRARCADETVTID
HHHHHHHCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCEEEECCCEEEEC
PHQTVYVLRREGTTLIVMPRHLLEP
CCCEEEEEEECCCEEEEECHHHCCC
>Mature Secondary Structure
MLNPLMIWLIIGAVLCSLEFIFPTAFMEFMLGLGAVAVAVIVYLVPSLDPNVQIFLWLLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
STIAIVSSRRFFTPKTSIRTISDAADAETLTAIAPGEAGRVLYEGNSWRARCADETVTID
HHHHHHHCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCEEEECCCEEEEC
PHQTVYVLRREGTTLIVMPRHLLEP
CCCEEEEEEECCCEEEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA