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The map label for this gene is ykuT [H]

Identifier: 170079174

GI number: 170079174

Start: 2697794

End: 2699500

Strand: Direct

Name: ykuT [H]

Synonym: SYNPCC7002_A2580

Alternate gene names: 170079174

Gene position: 2697794-2699500 (Clockwise)

Preceding gene: 170079172

Following gene: 170079175

Centisome position: 89.69

GC content: 49.03

Gene sequence:

>1707_bases
GTGAGAGTTACTAAATTTTTATATAGTCATTTATTCAAAATTTGGCGATCGCCTTTTTTCCTTTTCCTCTCCTCCTGCCT
GCTGGTGATCAGCCTTAGCCTTGGATTGCAGCAACCAGCGGGGGCAATTTTTGGCCTACCCTTACCGGAAGCAGATCTAG
GGGAGGTGTTGCCGAACAATGGTCAGGAGCTAATCGTCGATCGGTGTGTGTATTTGGATGGCCACTGTATTTTTAAGGTG
GCGGCTCCCCGTTCGGAACTTTCGACACGGCTGAACTATATCCAAACCCAACTCAACCGGATTAAACGGGTATATGACGC
GGAAAATGCCCCAGACATTCAAGTGATAACTGTTGGGTCTGAGGGGGAAGCGAACGGTGATCTAGAAAATAATATTCAAA
TCCAGGTGGGAGATGATGAATCCATCCGCTTGATGACCGTGACCCGCTGGGACGCACAACTGAGTGGCGAAGATATTGAA
GGACGCACCGAGCAAATTATTGGTCAGATTGAAAGTGCCTTAGACCGGGCTCAGCTTGAACGAACGGACACATTTTTAAA
ACAGCGGGTGGCGATCGCCATTGGTGTTGCCGTGGTGGCCTTAATCCTAGAAATTTTCGGGCGGCGCTGGCAGCGTAAAC
TCCACAAACAACAGGAGCGGGAAGCAGAATTTCCCCAAGGCAATACGACCCTCATTTCAATTCAACTGAGCCAACGGCAA
AGCAACAACCTCCGGGAAGTCAAAGTCCGTTTGAGCCAACTGCTTCAGGGAGGCGCGATTACCGCAGCCATTTTTATTAA
CTTGGGCTTATTTCCCCAAACGCGGATTGCCCAGGTTTGGCTGTTGGGCATTTTTAGATATCCTCTTTGGCTCGCCTTGA
TCGCCCTAGTGAGTTACTTATTGATCCGGCTGAGTTATGCGTTGATTGCCAAATTTAACCAACTCCTGGCCGATGGTGCC
CTCGAAGCGTTTACCTTTATCACCCAAGAGTCGAACCAACGGCTAGAACTGCGGGTACAAACCTTTTCCCAGGTGATGCG
TAGCGTCGTCACCCTGATTATTTTAGTGATTGCCCTGCTGGTCTTTTTTTGGTCGATTAATATCAATATCGCTCCCCTCC
TTGCGGGGGCCGGGATCATTGGTTTGGCGGTGTCCTTTGCGGCTCAAAATTTACTCAAGGATATTATCAATGGTTTTTCG
ATTATCCTCGAAGACCAATACGCCGTTGGCGATGTGATTAATGTGGGCTCGGTGACGGGTTTAGTCGAAAATATCAACCT
GCGCATTACCCAAATTCGGGACGCAGAAGGCCGCTTGATTACGATTCCCAATGGAGAAGTGCGGATCGTCGCTAATCTTT
CAAATCAATGGTCACGGGCCGATCTCAATATTCCGGTGCCCTACGAAACAGATGTCGATTTTGCCCTCAAGGTGTTGGGG
GAAGTGGCCGAACAAATGTATACGGATCGAGATTGGCGATCGCGCATTATTGAAGCCCCCTTAGTCCTGGGGGTGGATAA
TTTCAATGAGCGGGGCATGGTGATCAAGCTGTGGATCAAAACTTTGCCCCTAAAACAGTGGGAAGTGTCACGGGAATTTC
GGCGACGGGTCAAAATTGCCTTTGAAAAAGCGGGAATCATTATTCCTGTCTTCCAGAGTGATGTGTGGCTCCACGGTACA
GATCAGCCATTGGAGCCTCCCCATTAA

Upstream 100 bases:

>100_bases
AGGGCAGTTAGTTTTCGTGTACTGCTTATGGGTTTGGGTTGTTAATTAGATTGTTTTTGGCCAAAAATAAAGATTGAAGT
TTCCATAACACCTTGCATTT

Downstream 100 bases:

>100_bases
GGGCGATCGCCTTGCTCAATTCATTTTCTATATAATTGAACTCTGCCGTATTTCCTCTTAACTGTCCTTGACTGAGATCC
AAGCCGAAACCCTTAAACTT

Product: mechanosensitive ion channel family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MRVTKFLYSHLFKIWRSPFFLFLSSCLLVISLSLGLQQPAGAIFGLPLPEADLGEVLPNNGQELIVDRCVYLDGHCIFKV
AAPRSELSTRLNYIQTQLNRIKRVYDAENAPDIQVITVGSEGEANGDLENNIQIQVGDDESIRLMTVTRWDAQLSGEDIE
GRTEQIIGQIESALDRAQLERTDTFLKQRVAIAIGVAVVALILEIFGRRWQRKLHKQQEREAEFPQGNTTLISIQLSQRQ
SNNLREVKVRLSQLLQGGAITAAIFINLGLFPQTRIAQVWLLGIFRYPLWLALIALVSYLLIRLSYALIAKFNQLLADGA
LEAFTFITQESNQRLELRVQTFSQVMRSVVTLIILVIALLVFFWSININIAPLLAGAGIIGLAVSFAAQNLLKDIINGFS
IILEDQYAVGDVINVGSVTGLVENINLRITQIRDAEGRLITIPNGEVRIVANLSNQWSRADLNIPVPYETDVDFALKVLG
EVAEQMYTDRDWRSRIIEAPLVLGVDNFNERGMVIKLWIKTLPLKQWEVSREFRRRVKIAFEKAGIIIPVFQSDVWLHGT
DQPLEPPH

Sequences:

>Translated_568_residues
MRVTKFLYSHLFKIWRSPFFLFLSSCLLVISLSLGLQQPAGAIFGLPLPEADLGEVLPNNGQELIVDRCVYLDGHCIFKV
AAPRSELSTRLNYIQTQLNRIKRVYDAENAPDIQVITVGSEGEANGDLENNIQIQVGDDESIRLMTVTRWDAQLSGEDIE
GRTEQIIGQIESALDRAQLERTDTFLKQRVAIAIGVAVVALILEIFGRRWQRKLHKQQEREAEFPQGNTTLISIQLSQRQ
SNNLREVKVRLSQLLQGGAITAAIFINLGLFPQTRIAQVWLLGIFRYPLWLALIALVSYLLIRLSYALIAKFNQLLADGA
LEAFTFITQESNQRLELRVQTFSQVMRSVVTLIILVIALLVFFWSININIAPLLAGAGIIGLAVSFAAQNLLKDIINGFS
IILEDQYAVGDVINVGSVTGLVENINLRITQIRDAEGRLITIPNGEVRIVANLSNQWSRADLNIPVPYETDVDFALKVLG
EVAEQMYTDRDWRSRIIEAPLVLGVDNFNERGMVIKLWIKTLPLKQWEVSREFRRRVKIAFEKAGIIIPVFQSDVWLHGT
DQPLEPPH
>Mature_568_residues
MRVTKFLYSHLFKIWRSPFFLFLSSCLLVISLSLGLQQPAGAIFGLPLPEADLGEVLPNNGQELIVDRCVYLDGHCIFKV
AAPRSELSTRLNYIQTQLNRIKRVYDAENAPDIQVITVGSEGEANGDLENNIQIQVGDDESIRLMTVTRWDAQLSGEDIE
GRTEQIIGQIESALDRAQLERTDTFLKQRVAIAIGVAVVALILEIFGRRWQRKLHKQQEREAEFPQGNTTLISIQLSQRQ
SNNLREVKVRLSQLLQGGAITAAIFINLGLFPQTRIAQVWLLGIFRYPLWLALIALVSYLLIRLSYALIAKFNQLLADGA
LEAFTFITQESNQRLELRVQTFSQVMRSVVTLIILVIALLVFFWSININIAPLLAGAGIIGLAVSFAAQNLLKDIINGFS
IILEDQYAVGDVINVGSVTGLVENINLRITQIRDAEGRLITIPNGEVRIVANLSNQWSRADLNIPVPYETDVDFALKVLG
EVAEQMYTDRDWRSRIIEAPLVLGVDNFNERGMVIKLWIKTLPLKQWEVSREFRRRVKIAFEKAGIIIPVFQSDVWLHGT
DQPLEPPH

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=229, Percent_Identity=32.7510917030568, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1789291, Length=224, Percent_Identity=27.2321428571429, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI2367355, Length=225, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 63983; Mature: 63983

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTKFLYSHLFKIWRSPFFLFLSSCLLVISLSLGLQQPAGAIFGLPLPEADLGEVLPNN
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCC
GQELIVDRCVYLDGHCIFKVAAPRSELSTRLNYIQTQLNRIKRVYDAENAPDIQVITVGS
CCHHHHHHHEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
EGEANGDLENNIQIQVGDDESIRLMTVTRWDAQLSGEDIEGRTEQIIGQIESALDRAQLE
CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RTDTFLKQRVAIAIGVAVVALILEIFGRRWQRKLHKQQEREAEFPQGNTTLISIQLSQRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
SNNLREVKVRLSQLLQGGAITAAIFINLGLFPQTRIAQVWLLGIFRYPLWLALIALVSYL
CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRLSYALIAKFNQLLADGALEAFTFITQESNQRLELRVQTFSQVMRSVVTLIILVIALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
VFFWSININIAPLLAGAGIIGLAVSFAAQNLLKDIINGFSIILEDQYAVGDVINVGSVTG
HHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCHHHH
LVENINLRITQIRDAEGRLITIPNGEVRIVANLSNQWSRADLNIPVPYETDVDFALKVLG
HHHCCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
EVAEQMYTDRDWRSRIIEAPLVLGVDNFNERGMVIKLWIKTLPLKQWEVSREFRRRVKIA
HHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHHH
FEKAGIIIPVFQSDVWLHGTDQPLEPPH
HCCCCEEEEEECCCEEECCCCCCCCCCC
>Mature Secondary Structure
MRVTKFLYSHLFKIWRSPFFLFLSSCLLVISLSLGLQQPAGAIFGLPLPEADLGEVLPNN
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCC
GQELIVDRCVYLDGHCIFKVAAPRSELSTRLNYIQTQLNRIKRVYDAENAPDIQVITVGS
CCHHHHHHHEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
EGEANGDLENNIQIQVGDDESIRLMTVTRWDAQLSGEDIEGRTEQIIGQIESALDRAQLE
CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RTDTFLKQRVAIAIGVAVVALILEIFGRRWQRKLHKQQEREAEFPQGNTTLISIQLSQRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
SNNLREVKVRLSQLLQGGAITAAIFINLGLFPQTRIAQVWLLGIFRYPLWLALIALVSYL
CCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRLSYALIAKFNQLLADGALEAFTFITQESNQRLELRVQTFSQVMRSVVTLIILVIALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
VFFWSININIAPLLAGAGIIGLAVSFAAQNLLKDIINGFSIILEDQYAVGDVINVGSVTG
HHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCHHHH
LVENINLRITQIRDAEGRLITIPNGEVRIVANLSNQWSRADLNIPVPYETDVDFALKVLG
HHHCCCEEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
EVAEQMYTDRDWRSRIIEAPLVLGVDNFNERGMVIKLWIKTLPLKQWEVSREFRRRVKIA
HHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHHH
FEKAGIIIPVFQSDVWLHGTDQPLEPPH
HCCCCEEEEEECCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]