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The map label for this gene is ybjY [C]

Identifier: 170079146

GI number: 170079146

Start: 2660246

End: 2661670

Strand: Reverse

Name: ybjY [C]

Synonym: SYNPCC7002_A2552

Alternate gene names: 170079146

Gene position: 2661670-2660246 (Counterclockwise)

Preceding gene: 170079150

Following gene: 170079140

Centisome position: 88.48

GC content: 54.88

Gene sequence:

>1425_bases
ATGATTGGTGCCCTTGTCACCCCCAAAAAAGTTGTTTTGTCCTTGGCGGCCTTAGCTGGTGGGGTGCTACTCATTGGTCT
GCCGGTGGCGAGAATGTTTGGCGATCGCCAAGCAGGGGTGAATGAAGAACAACTGGCAGCCCTGACCGTTCCCGTTGAAG
TGGAAAATTTAGCGGTGCGCATCGAGGCCAACGGCATTGTCGAACCGATCCAGAGCGTTAACATTAGTCCCAAAACCCCC
GGTCGCCTCGCCCAACTGCTGGTGGAACAGGGAGATGTTGTCACCGAAGGCCAAGAACTGGCAATTATGGACAATAGTGA
ATTGTATGCCGAGGGGATTCGTGCTGAATCTCTGACAAAACAACGCATTGCCGAACTCCGGGCCACAGAAACCCGTATCC
AGGGAGAAATCGAAGAAGCCCGCGCCCGCTACATTCGCACCCAAGCCCAACTGCAACAGGCGGAACAACGCATTCCCAAA
GAAATTGATCAAGCCAATGCGCAACTAGCAGCAGCCCAAGCCAATCTCCAGCGCACCCAGGACAAGGTTGAACGCTTTGA
AACACTCCTCGACAGTGGGGCGATCGCCCAGGAAACCTATGACGATGTCCGCAATGAATTTGACAATGCTAGCGCCCGCT
TTTTTGAAGCCCAGCAACGGTTAGCCCAGGTTAGAAATACCGCCAATCCCGAACTCGAAGCCCTTACCGCTGCCACCGTC
GAGGCCAGAGCGAGCCTAGATCGCCTCGAACGCAACGCTGAACCCCAATTAACTCAACTGACGGCGGCCCTCGAACAGGC
CCAGGCCCAGCGACAAATTGCGGCGGTACAGTTCCAAGACAGCATTATTCGGGCGCCCTTTGATGGGGTAATCACCCAAA
AATTCGCCACCGAAGGGGCATTTGTCACCCCAACGACTGCCGCTTCGAGTACGGCTTCGGCCACCTCTTCGTCTATTTTG
GCCCTAGCACGGGGTTTGGAAGTGGTCGCCAGGGTGCCGGAGGTAGATATTCAGCAAATTGAACCGGGTCAGGATGTGGA
AATTGTTGCCGATGCGGATCCCGCCCAGGTGTTTCGGGGACGGGTGTTGTTGGTGGCCCCGGAAGCGATTGTCGAAAATA
ATGTAACTTCCTTTGAGGTGCGCATTGCCCTGTTATCGGGTCGGGAATTTCTCCGCTCGAAGATGAATACTGACGTTACT
TTCGTCGGCCAAAACTTAACCAATGTGATGACAGTGCCCACGGTGGCGATCGCCACAGAAAATGGCGAAACCGGGGTCCT
CATTCCTGATGCGAATAACACTCCCCAATTTAAGCCTGTGATCATCGGCGCGACCGTCGGCGATCGCACCCAGATTGTCC
GGGGCGTCACCCCAGAAGACAGGGTCTTTATTGACCTCCCAGAAAACCTAGAGCGGCCTGAATAA

Upstream 100 bases:

>100_bases
CCATTGTAAAAAGATTCCCCACGGGGGACTATTTCAATTTTGAGGGATTACAGTAGACTACGGATTAGTCCTGTTTACTC
AACCCCCCGCAAAAATTCCT

Downstream 100 bases:

>100_bases
TTTTAGATTTACTGGGGCAGAGAATCCGATAAATCCACCCCACACTGGCGACAAAACTCTGTGTATTTATAGGTTTTTGC
CGCACAGTTTGGGCAACTAA

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MIGALVTPKKVVLSLAALAGGVLLIGLPVARMFGDRQAGVNEEQLAALTVPVEVENLAVRIEANGIVEPIQSVNISPKTP
GRLAQLLVEQGDVVTEGQELAIMDNSELYAEGIRAESLTKQRIAELRATETRIQGEIEEARARYIRTQAQLQQAEQRIPK
EIDQANAQLAAAQANLQRTQDKVERFETLLDSGAIAQETYDDVRNEFDNASARFFEAQQRLAQVRNTANPELEALTAATV
EARASLDRLERNAEPQLTQLTAALEQAQAQRQIAAVQFQDSIIRAPFDGVITQKFATEGAFVTPTTAASSTASATSSSIL
ALARGLEVVARVPEVDIQQIEPGQDVEIVADADPAQVFRGRVLLVAPEAIVENNVTSFEVRIALLSGREFLRSKMNTDVT
FVGQNLTNVMTVPTVAIATENGETGVLIPDANNTPQFKPVIIGATVGDRTQIVRGVTPEDRVFIDLPENLERPE

Sequences:

>Translated_474_residues
MIGALVTPKKVVLSLAALAGGVLLIGLPVARMFGDRQAGVNEEQLAALTVPVEVENLAVRIEANGIVEPIQSVNISPKTP
GRLAQLLVEQGDVVTEGQELAIMDNSELYAEGIRAESLTKQRIAELRATETRIQGEIEEARARYIRTQAQLQQAEQRIPK
EIDQANAQLAAAQANLQRTQDKVERFETLLDSGAIAQETYDDVRNEFDNASARFFEAQQRLAQVRNTANPELEALTAATV
EARASLDRLERNAEPQLTQLTAALEQAQAQRQIAAVQFQDSIIRAPFDGVITQKFATEGAFVTPTTAASSTASATSSSIL
ALARGLEVVARVPEVDIQQIEPGQDVEIVADADPAQVFRGRVLLVAPEAIVENNVTSFEVRIALLSGREFLRSKMNTDVT
FVGQNLTNVMTVPTVAIATENGETGVLIPDANNTPQFKPVIIGATVGDRTQIVRGVTPEDRVFIDLPENLERPE
>Mature_474_residues
MIGALVTPKKVVLSLAALAGGVLLIGLPVARMFGDRQAGVNEEQLAALTVPVEVENLAVRIEANGIVEPIQSVNISPKTP
GRLAQLLVEQGDVVTEGQELAIMDNSELYAEGIRAESLTKQRIAELRATETRIQGEIEEARARYIRTQAQLQQAEQRIPK
EIDQANAQLAAAQANLQRTQDKVERFETLLDSGAIAQETYDDVRNEFDNASARFFEAQQRLAQVRNTANPELEALTAATV
EARASLDRLERNAEPQLTQLTAALEQAQAQRQIAAVQFQDSIIRAPFDGVITQKFATEGAFVTPTTAASSTASATSSSIL
ALARGLEVVARVPEVDIQQIEPGQDVEIVADADPAQVFRGRVLLVAPEAIVENNVTSFEVRIALLSGREFLRSKMNTDVT
FVGQNLTNVMTVPTVAIATENGETGVLIPDANNTPQFKPVIIGATVGDRTQIVRGVTPEDRVFIDLPENLERPE

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143
- InterPro:   IPR022936 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 51339; Mature: 51339

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGALVTPKKVVLSLAALAGGVLLIGLPVARMFGDRQAGVNEEQLAALTVPVEVENLAVR
CCCCCCCHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCHHHEEEEEEEEEEEEEEEE
IEANGIVEPIQSVNISPKTPGRLAQLLVEQGDVVTEGQELAIMDNSELYAEGIRAESLTK
EECCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCEEEEEECCHHHHHCCCHHHHHH
QRIAELRATETRIQGEIEEARARYIRTQAQLQQAEQRIPKEIDQANAQLAAAQANLQRTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
DKVERFETLLDSGAIAQETYDDVRNEFDNASARFFEAQQRLAQVRNTANPELEALTAATV
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
EARASLDRLERNAEPQLTQLTAALEQAQAQRQIAAVQFQDSIIRAPFDGVITQKFATEGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
FVTPTTAASSTASATSSSILALARGLEVVARVPEVDIQQIEPGQDVEIVADADPAQVFRG
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCHHHHHCC
RVLLVAPEAIVENNVTSFEVRIALLSGREFLRSKMNTDVTFVGQNLTNVMTVPTVAIATE
CEEEEECHHHHHCCCCEEEEEEEEECCHHHHHHHCCCCEEEECCCCCCEEEECEEEEEEC
NGETGVLIPDANNTPQFKPVIIGATVGDRTQIVRGVTPEDRVFIDLPENLERPE
CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MIGALVTPKKVVLSLAALAGGVLLIGLPVARMFGDRQAGVNEEQLAALTVPVEVENLAVR
CCCCCCCHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCHHHEEEEEEEEEEEEEEEE
IEANGIVEPIQSVNISPKTPGRLAQLLVEQGDVVTEGQELAIMDNSELYAEGIRAESLTK
EECCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCEEEEEECCHHHHHCCCHHHHHH
QRIAELRATETRIQGEIEEARARYIRTQAQLQQAEQRIPKEIDQANAQLAAAQANLQRTQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
DKVERFETLLDSGAIAQETYDDVRNEFDNASARFFEAQQRLAQVRNTANPELEALTAATV
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
EARASLDRLERNAEPQLTQLTAALEQAQAQRQIAAVQFQDSIIRAPFDGVITQKFATEGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
FVTPTTAASSTASATSSSILALARGLEVVARVPEVDIQQIEPGQDVEIVADADPAQVFRG
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCHHHHHCC
RVLLVAPEAIVENNVTSFEVRIALLSGREFLRSKMNTDVTFVGQNLTNVMTVPTVAIATE
CEEEEECHHHHHCCCCEEEEEEEEECCHHHHHHHCCCCEEEECCCCCCEEEECEEEEEEC
NGETGVLIPDANNTPQFKPVIIGATVGDRTQIVRGVTPEDRVFIDLPENLERPE
CCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA