| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is arnT [H]
Identifier: 170079139
GI number: 170079139
Start: 2650529
End: 2652097
Strand: Reverse
Name: arnT [H]
Synonym: SYNPCC7002_A2545
Alternate gene names: 170079139
Gene position: 2652097-2650529 (Counterclockwise)
Preceding gene: 170079140
Following gene: 170079135
Centisome position: 88.17
GC content: 51.75
Gene sequence:
>1569_bases ATGAGCCACAGCAAGCGTCGGTGGGAAGATTGGGGCCAAACCCTTGGCGATCGCCAAATTATCTTAGGTTTAAGTCTAGC GGCCCTTTTTTTGTTTTGTCTGAATCTGGGAAATATGCCCCTCCGGGATTGGGATGAAGGCACCAGGGCACTGGTGGCGC GGGAAATTTTCCGTACTGGCAACTGGTTGCATCCCACCCAATTCGGCGATCCTTACCTGCTGAAACCCCCCTTAATGGAT TGGCTCGTGGCCAGTAGCTATACCCTCGGTGGCGTGAATGAATGGACAAGTCGCTTACCAGGGGCTGTAGGAAGTGCTCT GGGAGTGCCTCTCCTCTACTGCCTCGGACGGCAATTATTCCAGGGGCGATCGCCTGCCCTGTGGAGTGTCTTGGTCTATC TCACCCTCTTACCTGTGGTACGCCATGGTCGTCTGCTGATGCTTGATGGTCTGGTTTTAACGGCCCTCATCTTCAGTCTC TGGTGTTTACTCAAGGCGCAAAAATCCCCCATCTGGGGACTGGGCTTCGGTCTGGGCTTGGGCATCATTGCCTTTGTCAA GGGGTTATTAATGCTTCCCCTGGGGGCGATCGCCCTGTTGTTTGTGATTTGGGATCGCCGCTGGTTTATTTTTAAAAATC TCTATATTTGGCTGGGGTTGGGTCTCGGCGCTTGCCCGGTGCTTCTCTGGTATGGGGCGCAAATTCAGCATTATGGTGCG ACTTTTATTCAGGTGCATTTTTTCAACCAAGGGTTTGACCGGGTCGCCAGTACCGTTGAAAGTCACCAAGAGCCCCCCTG GTTTTATTTATTAGAAATAGCCAAATACACGGCCCCTTGGTTATTTTTTCTACCCCAAAGTTATCAATACCTTTGGCAGA TCCGCCAAACTTCTAGCAGCAGATTAATTTTGACGGGCAGCATCTTTTATCTGGGTTTAATTTCTGCGATGGGGACAAAA TTGCCCTGGTATGTGATGCCGATTTACCCGTTTTTGGCCCTTGCGCTGGGACATTACTTAGCGAAACTCTGGGATGCACC ACCACGCAAGGCGATGTTTCTGCGGGGGCTATTTGGGTTGTTGGCGATCGCCGCTTTGGGGGGAGGTATTTATCTCTACT TCACAGATCCCCAGGTTCCCTTAATTTTGATGGCCCTGACCCTAGGGGGGATGTTTGCCGTGACTACCTGGCTTTGGCCC CGGCCCCAGGCTCTTTATATTTTGGTGGGAGGAATGTATTGCGGTTTGGCTCTGCTGTTTTGCTCCCAGGCTTGGGTTTG GGAAATTAACGAAGCTTTTCCGGTCAAACCCATTGCCGCCATCATTCGGGCAGAGACCCCAGCCGATGCGATTATTTTTA CCACCTTTGATTACAGTCGGCCCAGCTTAGATTTCTATGGCGATCGCCCTGTGCGTCCCCAGCCCCTCGAAGCGCCCGTT GGCGAGCAATATTGGCTCATTCACCAAGATTTGTTGACAGAACAACCGGCCCTAAAAGAAGCATTGCCTCCCTTTGAACT GCTGGGACGGGCCTCAGGATTTAACCTGGTGCATTTTTTCCCGGACTAA
Upstream 100 bases:
>100_bases GTAGCAAAGCAACCAAGAAACGTTCGACGACAAAAAAGAAAACGACGACGAAAAAAACAACAGCAAAAAAAACCACCAGC CGTAAAACAAAAACTTCTTC
Downstream 100 bases:
>100_bases AGGAGGCGATTGCGCGATAATTCGGTTGTGTTGGGCGGCTAAATTGGCCTTAAAAAATATTGAAAGAATCAACTTCTAAG GCTTTTGATCCACCTTCCCG
Product: dolichyl-phosphate-mannose-protein mannosyltransferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MSHSKRRWEDWGQTLGDRQIILGLSLAALFLFCLNLGNMPLRDWDEGTRALVAREIFRTGNWLHPTQFGDPYLLKPPLMD WLVASSYTLGGVNEWTSRLPGAVGSALGVPLLYCLGRQLFQGRSPALWSVLVYLTLLPVVRHGRLLMLDGLVLTALIFSL WCLLKAQKSPIWGLGFGLGLGIIAFVKGLLMLPLGAIALLFVIWDRRWFIFKNLYIWLGLGLGACPVLLWYGAQIQHYGA TFIQVHFFNQGFDRVASTVESHQEPPWFYLLEIAKYTAPWLFFLPQSYQYLWQIRQTSSSRLILTGSIFYLGLISAMGTK LPWYVMPIYPFLALALGHYLAKLWDAPPRKAMFLRGLFGLLAIAALGGGIYLYFTDPQVPLILMALTLGGMFAVTTWLWP RPQALYILVGGMYCGLALLFCSQAWVWEINEAFPVKPIAAIIRAETPADAIIFTTFDYSRPSLDFYGDRPVRPQPLEAPV GEQYWLIHQDLLTEQPALKEALPPFELLGRASGFNLVHFFPD
Sequences:
>Translated_522_residues MSHSKRRWEDWGQTLGDRQIILGLSLAALFLFCLNLGNMPLRDWDEGTRALVAREIFRTGNWLHPTQFGDPYLLKPPLMD WLVASSYTLGGVNEWTSRLPGAVGSALGVPLLYCLGRQLFQGRSPALWSVLVYLTLLPVVRHGRLLMLDGLVLTALIFSL WCLLKAQKSPIWGLGFGLGLGIIAFVKGLLMLPLGAIALLFVIWDRRWFIFKNLYIWLGLGLGACPVLLWYGAQIQHYGA TFIQVHFFNQGFDRVASTVESHQEPPWFYLLEIAKYTAPWLFFLPQSYQYLWQIRQTSSSRLILTGSIFYLGLISAMGTK LPWYVMPIYPFLALALGHYLAKLWDAPPRKAMFLRGLFGLLAIAALGGGIYLYFTDPQVPLILMALTLGGMFAVTTWLWP RPQALYILVGGMYCGLALLFCSQAWVWEINEAFPVKPIAAIIRAETPADAIIFTTFDYSRPSLDFYGDRPVRPQPLEAPV GEQYWLIHQDLLTEQPALKEALPPFELLGRASGFNLVHFFPD >Mature_521_residues SHSKRRWEDWGQTLGDRQIILGLSLAALFLFCLNLGNMPLRDWDEGTRALVAREIFRTGNWLHPTQFGDPYLLKPPLMDW LVASSYTLGGVNEWTSRLPGAVGSALGVPLLYCLGRQLFQGRSPALWSVLVYLTLLPVVRHGRLLMLDGLVLTALIFSLW CLLKAQKSPIWGLGFGLGLGIIAFVKGLLMLPLGAIALLFVIWDRRWFIFKNLYIWLGLGLGACPVLLWYGAQIQHYGAT FIQVHFFNQGFDRVASTVESHQEPPWFYLLEIAKYTAPWLFFLPQSYQYLWQIRQTSSSRLILTGSIFYLGLISAMGTKL PWYVMPIYPFLALALGHYLAKLWDAPPRKAMFLRGLFGLLAIAALGGGIYLYFTDPQVPLILMALTLGGMFAVTTWLWPR PQALYILVGGMYCGLALLFCSQAWVWEINEAFPVKPIAAIIRAETPADAIIFTTFDYSRPSLDFYGDRPVRPQPLEAPVG EQYWLIHQDLLTEQPALKEALPPFELLGRASGFNLVHFFPD
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=304, Percent_Identity=28.2894736842105, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 58954; Mature: 58823
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSKRRWEDWGQTLGDRQIILGLSLAALFLFCLNLGNMPLRDWDEGTRALVAREIFRTG CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC NWLHPTQFGDPYLLKPPLMDWLVASSYTLGGVNEWTSRLPGAVGSALGVPLLYCLGRQLF CCCCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QGRSPALWSVLVYLTLLPVVRHGRLLMLDGLVLTALIFSLWCLLKAQKSPIWGLGFGLGL CCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GIIAFVKGLLMLPLGAIALLFVIWDRRWFIFKNLYIWLGLGLGACPVLLWYGAQIQHYGA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCC TFIQVHFFNQGFDRVASTVESHQEPPWFYLLEIAKYTAPWLFFLPQSYQYLWQIRQTSSS EEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC RLILTGSIFYLGLISAMGTKLPWYVMPIYPFLALALGHYLAKLWDAPPRKAMFLRGLFGL EEEEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LAIAALGGGIYLYFTDPQVPLILMALTLGGMFAVTTWLWPRPQALYILVGGMYCGLALLF HHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHHH CSQAWVWEINEAFPVKPIAAIIRAETPADAIIFTTFDYSRPSLDFYGDRPVRPQPLEAPV HCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC GEQYWLIHQDLLTEQPALKEALPPFELLGRASGFNLVHFFPD CCCEEEEEHHHHCCCCHHHHCCCCHHHHCCCCCCCEEEECCC >Mature Secondary Structure SHSKRRWEDWGQTLGDRQIILGLSLAALFLFCLNLGNMPLRDWDEGTRALVAREIFRTG CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC NWLHPTQFGDPYLLKPPLMDWLVASSYTLGGVNEWTSRLPGAVGSALGVPLLYCLGRQLF CCCCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QGRSPALWSVLVYLTLLPVVRHGRLLMLDGLVLTALIFSLWCLLKAQKSPIWGLGFGLGL CCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH GIIAFVKGLLMLPLGAIALLFVIWDRRWFIFKNLYIWLGLGLGACPVLLWYGAQIQHYGA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCC TFIQVHFFNQGFDRVASTVESHQEPPWFYLLEIAKYTAPWLFFLPQSYQYLWQIRQTSSS EEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC RLILTGSIFYLGLISAMGTKLPWYVMPIYPFLALALGHYLAKLWDAPPRKAMFLRGLFGL EEEEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LAIAALGGGIYLYFTDPQVPLILMALTLGGMFAVTTWLWPRPQALYILVGGMYCGLALLF HHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECHHHHHHHHHH CSQAWVWEINEAFPVKPIAAIIRAETPADAIIFTTFDYSRPSLDFYGDRPVRPQPLEAPV HCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC GEQYWLIHQDLLTEQPALKEALPPFELLGRASGFNLVHFFPD CCCEEEEEHHHHCCCCHHHHCCCCHHHHCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA