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The map label for this gene is alr [H]

Identifier: 170079084

GI number: 170079084

Start: 2593961

End: 2595160

Strand: Direct

Name: alr [H]

Synonym: SYNPCC7002_A2489

Alternate gene names: 170079084

Gene position: 2593961-2595160 (Clockwise)

Preceding gene: 170079083

Following gene: 170079086

Centisome position: 86.23

GC content: 55.08

Gene sequence:

>1200_bases
TTGGAGCGATCGCCTGTGTTAGATGGAGAACAGCTATCCCATATCGTGTCCCAAGCGTGCCGTCATTATCAGTTTTCTAA
AGCGATTCGCCAACGGGCCTGGGTAGAAATTGACCATCAAGCGCTGGCGGCTAATATCCGTGCCCTCAAGGACATTCTCG
CGCCCCAAACGGCATTGATGGCGGTGGTAAAAGCCGATGCCTACGGCCATGGTGCGGTCAAGGTCGCCGAAACGGTACTC
AAGGCGGGGGCCAGTTGGTTGGCGATCGCCACCTTAGGGGAAGGGGTCGAACTGCGCGAAGCCGGGATTACTGCGCCGAT
CCTCGTTTTGGGGGCGACCAATACTACCGAAGAGATTGAGGCGATCGCCCATTGGGATTTGCAACCCACCCTCTGTAACC
TGTCCCAGGTGACTATTTTTAATGAAGCCCTCGCCCGATTAGGGAAAACGCTCCCTGTACACCTCAAAATCGACACCGGA
ATGTCCCGTCTCGGCACCCGCTGGGAGGAAGCGCTACCCTTCGTTGCGGCAGTTCATCAAGCTCCGCACCTCAACATTGC
CAGCATCTACTCCCACTTTGCCACCGCTGACGACCCAGACCCCACGACGATGGATCAGCAACACCAACGCTTCCAAGCGG
CGATCGCCAAACTCGAACAACAGGGAATACCGATCCCAAAACGACATATCAGTAATTCCGCTGCCACCCTCCACAGCCGC
GATCTCCACTACGATCTGGTGCGTTTGGGCCTTTCTATTTACGGTGTCTATCCAGCGCCCCACCTCAGCCCCAAAGTTCA
CCTCAAACCCGTGCTCCAGGTCAAAGCCCGCATTACTCAACTGAAAACTTTGCCCCCCGATACTGGCGTCAGCTACGGCC
ATCGCTTTATTACCGCCACAGACACAAAAACAGCAGTGGTGGGCATTGGTTACGCCGATGGTGTGCCCCGTCGCCTCTCC
AATAACTTAAAAGTCTTGGTTAATGGTGCCTTTGCCCCCCAAATTGGGGCGATTACGATGGATCAACTGATGCTCGACGT
TAGCCATCTTCCGGACGTCCAAGTCGGTGATGTGGTGACGCTCATTGGTACAGATCATGACCAGCAGCTAACCGTTGACC
AATGGGCGAATCAATTGGGCACGATTTCTTGGGAAATTCTCTGCGGTTTCAAGCATCGCCTGCCCCGGATTAACCTCTGA

Upstream 100 bases:

>100_bases
ATCAGCCTGTTTCTGTGGAGCGTAATTGCTGCTTTTGTGGCCCCAAAATACGAGCCTAGACTCTACACTCGATAAAATAA
GCAAAAAATTCTTATCAAAA

Downstream 100 bases:

>100_bases
GATTTGCACACGCTTTCTAACTATTGAGGTTGTAATTCCTCAAGGATCGTAAACCGCACATGGTTCAGGGCCAGATCTCC
TAGGGAAACTTGCTCTTTTG

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MERSPVLDGEQLSHIVSQACRHYQFSKAIRQRAWVEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVL
KAGASWLAIATLGEGVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTG
MSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISNSAATLHSR
DLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQVKARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLS
NNLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQLGTISWEILCGFKHRLPRINL

Sequences:

>Translated_399_residues
MERSPVLDGEQLSHIVSQACRHYQFSKAIRQRAWVEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVL
KAGASWLAIATLGEGVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTG
MSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISNSAATLHSR
DLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQVKARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLS
NNLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQLGTISWEILCGFKHRLPRINL
>Mature_399_residues
MERSPVLDGEQLSHIVSQACRHYQFSKAIRQRAWVEIDHQALAANIRALKDILAPQTALMAVVKADAYGHGAVKVAETVL
KAGASWLAIATLGEGVELREAGITAPILVLGATNTTEEIEAIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTG
MSRLGTRWEEALPFVAAVHQAPHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISNSAATLHSR
DLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQVKARITQLKTLPPDTGVSYGHRFITATDTKTAVVGIGYADGVPRRLS
NNLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVTLIGTDHDQQLTVDQWANQLGTISWEILCGFKHRLPRINL

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1787439, Length=367, Percent_Identity=30.2452316076294, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790487, Length=367, Percent_Identity=32.1525885558583, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608
- InterPro:   IPR020622 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 43606; Mature: 43606

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSPVLDGEQLSHIVSQACRHYQFSKAIRQRAWVEIDHQALAANIRALKDILAPQTALM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHCCHHHHH
AVVKADAYGHGAVKVAETVLKAGASWLAIATLGEGVELREAGITAPILVLGATNTTEEIE
HHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHCCCCCEEEEEECCCCHHHHH
AIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTGMSRLGTRWEEALPFVAAVHQ
HHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHC
APHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISNSAATLHSR
CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCC
DLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQVKARITQLKTLPPDTGVSYGHRFITAT
CCHHHHHHHCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
DTKTAVVGIGYADGVPRRLSNNLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVT
CCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
LIGTDHDQQLTVDQWANQLGTISWEILCGFKHRLPRINL
EEECCCCCEEEHHHHHHHHCCEEEEEEECHHHCCCCCCC
>Mature Secondary Structure
MERSPVLDGEQLSHIVSQACRHYQFSKAIRQRAWVEIDHQALAANIRALKDILAPQTALM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHCCHHHHH
AVVKADAYGHGAVKVAETVLKAGASWLAIATLGEGVELREAGITAPILVLGATNTTEEIE
HHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHCCCCCEEEEEECCCCHHHHH
AIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTGMSRLGTRWEEALPFVAAVHQ
HHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHHC
APHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISNSAATLHSR
CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHCC
DLHYDLVRLGLSIYGVYPAPHLSPKVHLKPVLQVKARITQLKTLPPDTGVSYGHRFITAT
CCHHHHHHHCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
DTKTAVVGIGYADGVPRRLSNNLKVLVNGAFAPQIGAITMDQLMLDVSHLPDVQVGDVVT
CCCEEEEEECCCCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
LIGTDHDQQLTVDQWANQLGTISWEILCGFKHRLPRINL
EEECCCCCEEEHHHHHHHHCCEEEEEEECHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]