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The map label for this gene is csd [H]

Identifier: 170078927

GI number: 170078927

Start: 2409396

End: 2410553

Strand: Direct

Name: csd [H]

Synonym: SYNPCC7002_A2332

Alternate gene names: 170078927

Gene position: 2409396-2410553 (Clockwise)

Preceding gene: 170078926

Following gene: 170078928

Centisome position: 80.1

GC content: 54.84

Gene sequence:

>1158_bases
ATGCCCGATCTGCACCAACATCGCCAACAGTTTCCTGCCCTCGCCCACAAAACTTACTTTAACTACGGTGGCCAGGGGCC
GTTACCCCAGTCGAGCCTTAATGCCATCCTAGACAGTTATCACCAGGGCGATCGCCAAGGGCCTTTTTCCCTCGCCCAGG
GTCAATGGGAAACGGGCATTATTCAAAAATTGCGGGGGGCGATCGCCGCTGAACTCCAAGCTCAACCCCAAAATATTGCC
CTCACCGAAAATGTAACTGCTGGCTGTAACATCGCCCTCTGGGGGATCGACTGGCAAGCGGGGGACGAAATCCTCCTCGG
TGATTGTGAACATCCAGGCATTGTTGGCATTGTCCAGGAGATTGCGGCCCGCTTCGACGTGAAGATTCGCATTTGTCCCC
TCTTTGACACTCTCAATGGGGGTGATCCTACAGCGACGATCGCCCAACATTTAACCCCCCAAACTCGCCTCTTGGTGATT
AGCCATCTTTTTTGGAATACAGGCCAGATATTGCCTTTAAAGGAAATTTGTACCCTCTGCCATGGCCAAAATACCCTGGT
GCTGGTGGATGCGGCCCAATCCTTCGGGATGCTACCCCTCGATTTACCAGGGTTGGGGGTCGATTTCTATGCCTTTACGG
GTCATAAATGGTGGTGCGGCCCGGCTGGGGTCGGCGGACTTTATATTTCCACCGAGGCGATCGCCCAGCATCGACCGACC
TTTATTGGCTGGCGGGGGGTAACCCAGTGGGATTCAACGACTGAAGTGGCCCTTGCCCAGGATGCCCGCCGTTATGAAGT
CGCAACTTCCGCTTATCCTCTCTACGTTGGCTTAATGGAGGCGATCCGCTTACATCAACAATGGGGTGATATGGCCAGCC
GTTATCAACAAATCTGCGATCGCAGTGCCTACTGTTGGGAAAAACTCAACGCGATCCCCCAGGTGCAATGTCTCAAAACC
ACCCCCCCCACTTCGGGGTTAGTCTCCTTTCAAGTCGATACCGCCCAAAGCCACAGTGATATTGTCAAAGCCCTCGAAGC
CCAGGGGTTTTGTCTCCGGACGATCCGCTTCCCGGACTGTATCCGCGCCTGTACACACTACTTCACCACCCCCGCAGACA
TCGACCAATTGGCGATCGCCCTCACCACCCTCACCTGA

Upstream 100 bases:

>100_bases
CCCGATAATATTCCCTGGCGCTACGATCCCAATACCCGTCAGTTTTCGCCCCAGCAATAACCCTGTTCATTTTTACCCCC
ATAATTTCATTCATTCTCCC

Downstream 100 bases:

>100_bases
GGCTCCCAAAACCTTTTAGATGAAACAGCGCTATATCTACTCATTATTGTTCCTATTACCTGGCTTCTCTGTCTCTCTAC
TGGGTACTTGGATAATAATG

Product: L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MPDLHQHRQQFPALAHKTYFNYGGQGPLPQSSLNAILDSYHQGDRQGPFSLAQGQWETGIIQKLRGAIAAELQAQPQNIA
LTENVTAGCNIALWGIDWQAGDEILLGDCEHPGIVGIVQEIAARFDVKIRICPLFDTLNGGDPTATIAQHLTPQTRLLVI
SHLFWNTGQILPLKEICTLCHGQNTLVLVDAAQSFGMLPLDLPGLGVDFYAFTGHKWWCGPAGVGGLYISTEAIAQHRPT
FIGWRGVTQWDSTTEVALAQDARRYEVATSAYPLYVGLMEAIRLHQQWGDMASRYQQICDRSAYCWEKLNAIPQVQCLKT
TPPTSGLVSFQVDTAQSHSDIVKALEAQGFCLRTIRFPDCIRACTHYFTTPADIDQLAIALTTLT

Sequences:

>Translated_385_residues
MPDLHQHRQQFPALAHKTYFNYGGQGPLPQSSLNAILDSYHQGDRQGPFSLAQGQWETGIIQKLRGAIAAELQAQPQNIA
LTENVTAGCNIALWGIDWQAGDEILLGDCEHPGIVGIVQEIAARFDVKIRICPLFDTLNGGDPTATIAQHLTPQTRLLVI
SHLFWNTGQILPLKEICTLCHGQNTLVLVDAAQSFGMLPLDLPGLGVDFYAFTGHKWWCGPAGVGGLYISTEAIAQHRPT
FIGWRGVTQWDSTTEVALAQDARRYEVATSAYPLYVGLMEAIRLHQQWGDMASRYQQICDRSAYCWEKLNAIPQVQCLKT
TPPTSGLVSFQVDTAQSHSDIVKALEAQGFCLRTIRFPDCIRACTHYFTTPADIDQLAIALTTLT
>Mature_384_residues
PDLHQHRQQFPALAHKTYFNYGGQGPLPQSSLNAILDSYHQGDRQGPFSLAQGQWETGIIQKLRGAIAAELQAQPQNIAL
TENVTAGCNIALWGIDWQAGDEILLGDCEHPGIVGIVQEIAARFDVKIRICPLFDTLNGGDPTATIAQHLTPQTRLLVIS
HLFWNTGQILPLKEICTLCHGQNTLVLVDAAQSFGMLPLDLPGLGVDFYAFTGHKWWCGPAGVGGLYISTEAIAQHRPTF
IGWRGVTQWDSTTEVALAQDARRYEVATSAYPLYVGLMEAIRLHQQWGDMASRYQQICDRSAYCWEKLNAIPQVQCLKTT
PPTSGLVSFQVDTAQSHSDIVKALEAQGFCLRTIRFPDCIRACTHYFTTPADIDQLAIALTTLT

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=405, Percent_Identity=25.679012345679, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI48994898, Length=336, Percent_Identity=23.5119047619048, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789175, Length=399, Percent_Identity=25.5639097744361, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI20129463, Length=178, Percent_Identity=28.6516853932584, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42442; Mature: 42311

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLHQHRQQFPALAHKTYFNYGGQGPLPQSSLNAILDSYHQGDRQGPFSLAQGQWETGI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHH
IQKLRGAIAAELQAQPQNIALTENVTAGCNIALWGIDWQAGDEILLGDCEHPGIVGIVQE
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHH
IAARFDVKIRICPLFDTLNGGDPTATIAQHLTPQTRLLVISHLFWNTGQILPLKEICTLC
HHHHCCCEEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH
HGQNTLVLVDAAQSFGMLPLDLPGLGVDFYAFTGHKWWCGPAGVGGLYISTEAIAQHRPT
CCCCEEEEEECHHHCCCCEECCCCCCEEEEEECCCCEEECCCCCCCEEEEHHHHHHCCCC
FIGWRGVTQWDSTTEVALAQDARRYEVATSAYPLYVGLMEAIRLHQQWGDMASRYQQICD
EEEECCCCCCCCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSAYCWEKLNAIPQVQCLKTTPPTSGLVSFQVDTAQSHSDIVKALEAQGFCLRTIRFPDC
CHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHH
IRACTHYFTTPADIDQLAIALTTLT
HHHHHHHCCCCCCHHHHHHHHEECC
>Mature Secondary Structure 
PDLHQHRQQFPALAHKTYFNYGGQGPLPQSSLNAILDSYHQGDRQGPFSLAQGQWETGI
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHH
IQKLRGAIAAELQAQPQNIALTENVTAGCNIALWGIDWQAGDEILLGDCEHPGIVGIVQE
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHH
IAARFDVKIRICPLFDTLNGGDPTATIAQHLTPQTRLLVISHLFWNTGQILPLKEICTLC
HHHHCCCEEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH
HGQNTLVLVDAAQSFGMLPLDLPGLGVDFYAFTGHKWWCGPAGVGGLYISTEAIAQHRPT
CCCCEEEEEECHHHCCCCEECCCCCCEEEEEECCCCEEECCCCCCCEEEEHHHHHHCCCC
FIGWRGVTQWDSTTEVALAQDARRYEVATSAYPLYVGLMEAIRLHQQWGDMASRYQQICD
EEEECCCCCCCCCCHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSAYCWEKLNAIPQVQCLKTTPPTSGLVSFQVDTAQSHSDIVKALEAQGFCLRTIRFPDC
CHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHH
IRACTHYFTTPADIDQLAIALTTLT
HHHHHHHCCCCCCHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]