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The map label for this gene is recF

Identifier: 170078873

GI number: 170078873

Start: 2360397

End: 2361563

Strand: Reverse

Name: recF

Synonym: SYNPCC7002_A2277

Alternate gene names: 170078873

Gene position: 2361563-2360397 (Counterclockwise)

Preceding gene: 170078874

Following gene: 170078872

Centisome position: 78.51

GC content: 53.9

Gene sequence:

>1167_bases
ATGTATTTGCAAACCTTGCACCTCCGTAATTTTCGCAACTACCAGCATCAGCATGTTGATTTTTCGGCCCAAAAAACCAT
CTTGATCGGCAACAACGCCCAGGGAAAATCAAACCTCCTCGAAGCCGTCGAACTGCTCGCCAGCCTCAAAACCCACCGCA
CCAGCCGGGACGCCGACCTAGTGAAACAAGGGGAAGCCACCGCCCGCATCCAAGCCCAAATTCAGCGTGGCTATGGCACT
GTTGACTTTGATCTTTTGCTCCGCAACCAGGGGGGGCGCACCCTCAAGCTCAATGGCGAAATCCTCCGTCGCCAACTCGA
TGGCCTCGGTACCCTCAATGCCGTGGAATTTTCCTGCCTTGATTTAGACCTTGTGCGGGGTGGGCCTGACTGTCGTCGCC
AATGGATTGATAATCTTTTGATCCAGTTAGAACCTGTCTATGCCCGGATTTTGCAGGAGTATCAACAGGTGCTGAAGCAA
CGCAATGCCCTCCTAAGGACGGCCAAAAAACTCCACCGGAACCAAGCGGCGATCCCCACTGATTTGACCCAACAGTTGAC
CCTCTGGGATCTCCAGTTAGCAGCCACAGGTTCGCGGGTCACCAGAAGGCGATCGCGGGGGCTACTCAGACTGATGCCCC
TGGCCCAAGCTTGGCACCGTGATATCAGTAGCCAAACCGAAACCTTAGAAATCACCTATTGTCCCAATATTCCCTGGCAA
CAGGATGACCCCCACCATGTGCAACAGGCCTGCCTCGACAAAATAGAACAACGCCGCCAAGCAGAACAACACCAGGGCAG
CAGCATGGTTGGCCCCCACCGGGACGAAATCGAATTTTCCATTAACGGCACCCCCGCCCGCTTCTATGGCTCCCAGGGGC
AGCAACGCACCTTGGTTTTAGCGCTCAAACTCGCCGAACTGCAACTCATTGAAACAATCATTGGTGAACCGCCCCTGTTG
CTTTTAGATGATGTCCTGGCTGAGCTTGATCCCTCCCGCCAAAATCAACTGCTAGACACGATTCAAACCCGTTTCCAAAC
CCTGATTACAACCACTCACCTCAATTCCTTTGGGGCAGACTGGCTAAAGCATTCGCAAATTTTGACGGTAAACCAAGGTA
CCTTACAACCCTACGCCCGTCCCCTGTCGGAAACCTACGGCCCCTGA

Upstream 100 bases:

>100_bases
TTTTTGGTTTGCGATTCCCCAGGCGATCGCCACTGCCTTAACCTAGGCATAACACGCTAAAATCAGGGTTCTGTTTCGGG
ACTTGGGCGACAGAAAAAGA

Downstream 100 bases:

>100_bases
GGTAGATTGGCTCCCCACGACAGATGACAATCCTGGAATTCGATCATAATGTAAGGATATTTGCTCTTTTTGGTGTGAGC
TGACCATGATTGCCAATCCT

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADLVKQGEATARIQAQIQRGYGT
VDFDLLLRNQGGRTLKLNGEILRRQLDGLGTLNAVEFSCLDLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQ
RNALLRTAKKLHRNQAAIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPNIPWQ
QDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARFYGSQGQQRTLVLALKLAELQLIETIIGEPPLL
LLDDVLAELDPSRQNQLLDTIQTRFQTLITTTHLNSFGADWLKHSQILTVNQGTLQPYARPLSETYGP

Sequences:

>Translated_388_residues
MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADLVKQGEATARIQAQIQRGYGT
VDFDLLLRNQGGRTLKLNGEILRRQLDGLGTLNAVEFSCLDLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQ
RNALLRTAKKLHRNQAAIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPNIPWQ
QDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARFYGSQGQQRTLVLALKLAELQLIETIIGEPPLL
LLDDVLAELDPSRQNQLLDTIQTRFQTLITTTHLNSFGADWLKHSQILTVNQGTLQPYARPLSETYGP
>Mature_388_residues
MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADLVKQGEATARIQAQIQRGYGT
VDFDLLLRNQGGRTLKLNGEILRRQLDGLGTLNAVEFSCLDLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQ
RNALLRTAKKLHRNQAAIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPNIPWQ
QDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARFYGSQGQQRTLVLALKLAELQLIETIIGEPPLL
LLDDVLAELDPSRQNQLLDTIQTRFQTLITTTHLNSFGADWLKHSQILTVNQGTLQPYARPLSETYGP

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=383, Percent_Identity=21.6710182767624, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_SYNP2 (B1XJ90)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735511.1
- ProteinModelPortal:   B1XJ90
- SMR:   B1XJ90
- GeneID:   6055385
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2277
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- ProtClustDB:   PRK00064
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 44215; Mature: 44215

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADL
CCEEEHHHHHHHCCCHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
VKQGEATARIQAQIQRGYGTVDFDLLLRNQGGRTLKLNGEILRRQLDGLGTLNAVEFSCL
HHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECHHHHHHHHHCCCCCCCEEEEEE
DLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQAAIPT
EEHHHCCCHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPNIPWQ
HHHHHHHHHEEEEHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
QDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARFYGSQGQQRTLVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEECCCCCCCEEEEE
ALKLAELQLIETIIGEPPLLLLDDVLAELDPSRQNQLLDTIQTRFQTLITTTHLNSFGAD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
WLKHSQILTVNQGTLQPYARPLSETYGP
HHCCCEEEEECCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADL
CCEEEHHHHHHHCCCHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
VKQGEATARIQAQIQRGYGTVDFDLLLRNQGGRTLKLNGEILRRQLDGLGTLNAVEFSCL
HHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECHHHHHHHHHCCCCCCCEEEEEE
DLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQAAIPT
EEHHHCCCHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPNIPWQ
HHHHHHHHHEEEEHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
QDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARFYGSQGQQRTLVL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEECCCCCCCEEEEE
ALKLAELQLIETIIGEPPLLLLDDVLAELDPSRQNQLLDTIQTRFQTLITTTHLNSFGAD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
WLKHSQILTVNQGTLQPYARPLSETYGP
HHCCCEEEEECCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA