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The map label for this gene is yjcF [C]

Identifier: 170078854

GI number: 170078854

Start: 2340401

End: 2341240

Strand: Reverse

Name: yjcF [C]

Synonym: SYNPCC7002_A2258

Alternate gene names: 170078854

Gene position: 2341240-2340401 (Counterclockwise)

Preceding gene: 170078855

Following gene: 170078853

Centisome position: 77.83

GC content: 52.26

Gene sequence:

>840_bases
ATGGATGCGGGAGAATTATTAGAACGCTATGCGGCCGGAGAACGGGATTTCCGGGAAATAGACCTTGAAGGGGCGTTTTT
GGGGGGCGGCAGTTTTGATGGGATCAATCTCCGGGAAAGCCATTTGTCCCGGATTGTGTTCACGGGGGCATCCCTTAAGC
AGGCAAATTTTCGGGAGGCAGATCTTACCAATAGCAGTCTCCAAGCCAATCTCAGTGAAGCAAATTTAATTTCCTGCGAC
CTGACCGACGCGAATTTAACCACCGCCCAACTCACCTACGGGGGACTCCGGGCAGCCAATTTAACTAATGCTCAACTGGT
CTCAGCGGATCTCAGTTGTGCCACCCTCAACGAAGCGATTTTGCGGGAAGCCAATCTCACCAACGCGACCTTAACGGATG
CATTCATTGGGCGAGCGAACTTAACCCAGGCCAACCTAGAAGGGGCCAACCTTGCCAATGCAAACCTCACCAGCACGATT
TTGATCGGCGCGAATTTAAAGGGAGCCAACCTTTCCCACGCGATTATGCACGGGGTCAATGCCACCGGGGCGATCGCCGA
CCACGCAGATTTTAGCCAGGCGAAACTTAATAGCGCCAACTTTACCAACGTTAAACTGCGCCAGGCGGTACTCCGGAAGG
TGCAAATGGCCTGGACAACCATGCGCGGAGCGGATCTGAGTGAGGCGCAACTTTTCCGCAGTAAGCTTTATTGGTCAAAT
TTCACCAGTGCGAATCTAACCCGGGCCGTGCTGCTAGATGCAACGGTGGATCAAGTAAATTTCCACAACGCGATTTTTGA
TGGGACAATTCTCCCCGAAGGTCTTGATGTGGGTAATTAA

Upstream 100 bases:

>100_bases
GACTAAAGATTCATAAAACTCATAAAGTTCATATTCGCCATGTCTTGGGTCACAGCCTTGGCCCAGTCACAGTCTCAGGA
GGAATACCATTTTGAAACGA

Downstream 100 bases:

>100_bases
GTGAAATTTCTGGGGGTTGATTTTGGTTGGACGTCCGGTGCCAGTGGTTTGTGTTGTTTAGAAATACAAGATCAGCAATT
GGCGATCGCCCAGTTTGATC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDAGELLERYAAGERDFREIDLEGAFLGGGSFDGINLRESHLSRIVFTGASLKQANFREADLTNSSLQANLSEANLISCD
LTDANLTTAQLTYGGLRAANLTNAQLVSADLSCATLNEAILREANLTNATLTDAFIGRANLTQANLEGANLANANLTSTI
LIGANLKGANLSHAIMHGVNATGAIADHADFSQAKLNSANFTNVKLRQAVLRKVQMAWTTMRGADLSEAQLFRSKLYWSN
FTSANLTRAVLLDATVDQVNFHNAIFDGTILPEGLDVGN

Sequences:

>Translated_279_residues
MDAGELLERYAAGERDFREIDLEGAFLGGGSFDGINLRESHLSRIVFTGASLKQANFREADLTNSSLQANLSEANLISCD
LTDANLTTAQLTYGGLRAANLTNAQLVSADLSCATLNEAILREANLTNATLTDAFIGRANLTQANLEGANLANANLTSTI
LIGANLKGANLSHAIMHGVNATGAIADHADFSQAKLNSANFTNVKLRQAVLRKVQMAWTTMRGADLSEAQLFRSKLYWSN
FTSANLTRAVLLDATVDQVNFHNAIFDGTILPEGLDVGN
>Mature_279_residues
MDAGELLERYAAGERDFREIDLEGAFLGGGSFDGINLRESHLSRIVFTGASLKQANFREADLTNSSLQANLSEANLISCD
LTDANLTTAQLTYGGLRAANLTNAQLVSADLSCATLNEAILREANLTNATLTDAFIGRANLTQANLEGANLANANLTSTI
LIGANLKGANLSHAIMHGVNATGAIADHADFSQAKLNSANFTNVKLRQAVLRKVQMAWTTMRGADLSEAQLFRSKLYWSN
FTSANLTRAVLLDATVDQVNFHNAIFDGTILPEGLDVGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=170, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 29792; Mature: 29792

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAGELLERYAAGERDFREIDLEGAFLGGGSFDGINLRESHLSRIVFTGASLKQANFREA
CCHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCHHHHHCEEEEECCCCCCCCCCCC
DLTNSSLQANLSEANLISCDLTDANLTTAQLTYGGLRAANLTNAQLVSADLSCATLNEAI
CCCCCHHCCCCCCCEEEEEECCCCCCEEEEEEECCEEECCCCCCEEEECCCCHHHHHHHH
LREANLTNATLTDAFIGRANLTQANLEGANLANANLTSTILIGANLKGANLSHAIMHGVN
HHHCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCC
ATGAIADHADFSQAKLNSANFTNVKLRQAVLRKVQMAWTTMRGADLSEAQLFRSKLYWSN
CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
FTSANLTRAVLLDATVDQVNFHNAIFDGTILPEGLDVGN
CCCCCCEEEEEEECHHHHHCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MDAGELLERYAAGERDFREIDLEGAFLGGGSFDGINLRESHLSRIVFTGASLKQANFREA
CCHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCHHHHHCEEEEECCCCCCCCCCCC
DLTNSSLQANLSEANLISCDLTDANLTTAQLTYGGLRAANLTNAQLVSADLSCATLNEAI
CCCCCHHCCCCCCCEEEEEECCCCCCEEEEEEECCEEECCCCCCEEEECCCCHHHHHHHH
LREANLTNATLTDAFIGRANLTQANLEGANLANANLTSTILIGANLKGANLSHAIMHGVN
HHHCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCC
ATGAIADHADFSQAKLNSANFTNVKLRQAVLRKVQMAWTTMRGADLSEAQLFRSKLYWSN
CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
FTSANLTRAVLLDATVDQVNFHNAIFDGTILPEGLDVGN
CCCCCCEEEEEEECHHHHHCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]