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The map label for this gene is cpcF [H]

Identifier: 170078812

GI number: 170078812

Start: 2304104

End: 2304745

Strand: Direct

Name: cpcF [H]

Synonym: SYNPCC7002_A2214

Alternate gene names: 170078812

Gene position: 2304104-2304745 (Clockwise)

Preceding gene: 170078811

Following gene: 170078818

Centisome position: 76.6

GC content: 50.47

Gene sequence:

>642_bases
TTGCGATCGCTAATTTCTGAACCCATGACCGTCGACGTTTTAATTCGTGCCGTTAACAACCCCACTTCAGCCCAAGACCT
GGTCAAAAATGTGGCCCAACTCGCCGCAACAAAAGATGAACAAGCCATTCCAACTCTGGTAGAAGTGCTGAAATTTAATA
ATCCGGGGGCGGCCGTCGCGGCGGTCAATGGTCTGATCAATATTGGCGAGGCCGTTGTGCCCTACCTCCTCGAAAATGTC
GATGGCTATAACTACGGAGCGCGGGCATGGATGCTGCGGATCTTTGCCGGAATTGGTGATCCCAGAGCTTTAGACCTGCT
AATTGAGGCGGCGAATAAGGATTTTGCCTTTAGTGTGCGGCGCTCTGCGGCCAAAGGGTTAGGGAATATTCAATGGCATA
AAGTGCCAGATTCTGAGCGAGAAGTGCAGCAGCAAAAAGTCTGTGATTGTCTATTCCTGGCCCTTGAAGATGGAGAATGG
GTGGTTCGCTATGGGGCGATCGCCGGACTAGAGGGTTTGTCGCAAGCCATTCCAGAAGCTAGAAAAATCGTCATCAAAAA
CAAACTCACCGAATTTCTCACCACAGAACCAGAAGCCGCAATCCGTGCCCGAATCCAAAAAGCAATCCTGAGTCTTCCGT
GA

Upstream 100 bases:

>100_bases
TACAACGGACCGCCGAAACCCTCGATGCGGACGGTTTACAATTGCTCGAATTAATGGATAGTCTGCTCTAGGAACCTCAT
AAACCAAATCCCTACATTTT

Downstream 100 bases:

>100_bases
CATACTCCCGACGCTGAATCAAAGATTACAGCGCGGGCTTCTTAAATCGCTTTAAGAAATTCCTGCTTCAAAGCCTCCCT
ACTGGGCGTAGCTCCACAGG

Product: phycocyanin alpha subunit phycocyanobilin lyase, CpcF

Products: NA

Alternate protein names: Phycocyanin operon protein CpcF [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MRSLISEPMTVDVLIRAVNNPTSAQDLVKNVAQLAATKDEQAIPTLVEVLKFNNPGAAVAAVNGLINIGEAVVPYLLENV
DGYNYGARAWMLRIFAGIGDPRALDLLIEAANKDFAFSVRRSAAKGLGNIQWHKVPDSEREVQQQKVCDCLFLALEDGEW
VVRYGAIAGLEGLSQAIPEARKIVIKNKLTEFLTTEPEAAIRARIQKAILSLP

Sequences:

>Translated_213_residues
MRSLISEPMTVDVLIRAVNNPTSAQDLVKNVAQLAATKDEQAIPTLVEVLKFNNPGAAVAAVNGLINIGEAVVPYLLENV
DGYNYGARAWMLRIFAGIGDPRALDLLIEAANKDFAFSVRRSAAKGLGNIQWHKVPDSEREVQQQKVCDCLFLALEDGEW
VVRYGAIAGLEGLSQAIPEARKIVIKNKLTEFLTTEPEAAIRARIQKAILSLP
>Mature_213_residues
MRSLISEPMTVDVLIRAVNNPTSAQDLVKNVAQLAATKDEQAIPTLVEVLKFNNPGAAVAAVNGLINIGEAVVPYLLENV
DGYNYGARAWMLRIFAGIGDPRALDLLIEAANKDFAFSVRRSAAKGLGNIQWHKVPDSEREVQQQKVCDCLFLALEDGEW
VVRYGAIAGLEGLSQAIPEARKIVIKNKLTEFLTTEPEAAIRARIQKAILSLP

Specific function: Required for the chromophorylation of the cpcA gene product [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 23219; Mature: 23219

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLISEPMTVDVLIRAVNNPTSAQDLVKNVAQLAATKDEQAIPTLVEVLKFNNPGAAVA
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH
AVNGLINIGEAVVPYLLENVDGYNYGARAWMLRIFAGIGDPRALDLLIEAANKDFAFSVR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
RSAAKGLGNIQWHKVPDSEREVQQQKVCDCLFLALEDGEWVVRYGAIAGLEGLSQAIPEA
HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
RKIVIKNKLTEFLTTEPEAAIRARIQKAILSLP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSLISEPMTVDVLIRAVNNPTSAQDLVKNVAQLAATKDEQAIPTLVEVLKFNNPGAAVA
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH
AVNGLINIGEAVVPYLLENVDGYNYGARAWMLRIFAGIGDPRALDLLIEAANKDFAFSVR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHH
RSAAKGLGNIQWHKVPDSEREVQQQKVCDCLFLALEDGEWVVRYGAIAGLEGLSQAIPEA
HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH
RKIVIKNKLTEFLTTEPEAAIRARIQKAILSLP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1644801 [H]