| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078776
Identifier: 170078776
GI number: 170078776
Start: 2268254
End: 2271106
Strand: Direct
Name: 170078776
Synonym: SYNPCC7002_A2178
Alternate gene names: NA
Gene position: 2268254-2271106 (Clockwise)
Preceding gene: 170078773
Following gene: 170078780
Centisome position: 75.41
GC content: 49.07
Gene sequence:
>2853_bases TTGGCACAGCAAAATGGTGTTGAGCTAAAAGCAAAGCCCAACTTCAGGCCCGGTTGTATTACGTCGTACTACTTTTGTGT TTCTGTTGTAGATCTTTCTAGTGACCATTTATTTTTTACAATCCACAGCAAAATGACCTTGCCTAGATCTCGCCCCATTC TCCGTAGTCTTCTTTGTGCGATGGCCTCCACTCCCTTCGCCACCCTCGCCGCCGCAATGGAAGCGACTAATGTCAGCGTT GATAATTCCCTTGAGCAGGTCAATTTATCCCCCACTTCTGCACCAGAAGCCCAAGCAGTCCAGTCTCCAGCAGAAGTTTC AACCGTAGTTCAGAATACTGTCCCTGGGCCTAATCCAAAGCAGCAACTCATTGCCCGCGCCCCTGCCACCACAGCACAAG ATGAATCAAAGCCATCAGCCGAAGCTCCTCCAACAGAACAACTAATTGCCCAAGTCCCTACCACAGGTAACTCTGGAGCC CCAGCAACAGGTCTCTCGTCGGCTGAGTTAATCCAGTTAGCCCAGCTCCTTTCGCAGCTCGGCGATCTCTCCGCACTCCA AGAACAACTCAGTAATATCCAAGAAGAGTTGGGTGAAATTCGATCGGTGGTTCGTGATCTCCAACAGGAGAGTGTCATTA ACTCTCAGGCACCCCCTCGCTTATCTGAACCAATACAGCAGCAAGAGAGGGTTGCGACGAATCAAGAAAATTCGCGTCCT GTAGCAACATCGTCACCAGTTTCTAATACAGAAGCCAGCACAGAAACAGACAGTGACGTCGCGCAAATTCCTGTCTTAAC GCCAGATCCAATTCCAGAAGAAGAGATACCAGAACCTGAGACTGACGATTTTCTTCAAAAAATGCCTCTCAATCGTGTTA ATCCCTTAATCACGACACAAAATCTGGATGGCGTACCGATTTCTCATTTTTCCGATTGGGAAATTGCCGCCTCTGGCCTC CTGTCCGATGCCACAACGAGCGATGTGAATGTAGACGGCTTTGCTCGGCTGGATTCTGACATTTTCCAAGGAACGACCGC TGATAACGTGGCGGTGACAGATTTTCGGGGAACTTACGTACGCCTGCGATCTGCCGCCCAAGACCGGGAGGTGGAAACTG AGATTGATCAGGCTGTAACTCTAGGGGGCTATTTATACCAGTTCACCCTCACAGGAGGATGCGACATCCTTGATCCCGGA GGAGGCGGTAGTGACGAGACTTGTAGTTTTTTACCCCCGGTTGCCTTCGATCCCCAAAGCTATGACCCAGATACCCTCCT CCCCGGTCGGCTCCTAGATTCGGGTATTGCTTTTGGTGGGGTCGTTTCAGAAGAAAACTTAGCCTTTATCAAGCAACCTG GTTTCCAACGAGGATTACCCGGTCAAGAAGTCGGTATTGAACTAAACGTACCCAATTCTGGAATTGTTGCCGTTGGCCCA GAGACAGGTCGCCAGGGCCAAACCATTCGTCGCGAAAATTTAGATAATACCTACAGTGTTGGAATTGCCAATGTGCGGCA AGTGCTCAAGCAAAATGACCAGGAAGCCGTTTTAGGGCGAACAGTACGCGGGTTTGCAGCGATTCCCAACGATGAAGATT TTGGCCTCGATAGTGCAGTGCAGCTAGCAACCTTACTCTTGCCGGATGTTGACCCAGCCCTAGAAGGGGGAGATGCACCA CCAAATCCGAATGTTAATGCTAACTTGTTTAGCGCTGCGAACAATTCTCGCTTACCTGCCAATAGCTTCACGGCTTATCA AGGGAGTGTTTCCCGTGCAGAAAGCGTTACGGATCTAAGTACTCCGCCAGAGGATATTCCCGCAGCAACCTCGAACAGTT TTTGGGTCGGTCTTTCTCCTGTGCTTGATCGTGAGATTGAAATCTTAGAAGATGGCAGTCGTTTTAAGGATTTTAGTGGG CCGCGTCTGGTGGCAGCCGCTTATGGTGAAGGGGGAGCCGAAGTTGCAGATAATCTGAGTGCTCAAGTAGCAGCGACATT ACTCAACGAGGTTGGTGGTGTTGATCAGCAGCTATTGTTGGACTTTGATGATATTCAGGATGCCTATACTCAAATTGGCT TGGCCTTTTTTGAGCGGGATGCAACACAAATCATCAAAACTCGCTACAGTGAGCGAACAAATTATGTGCCTCACCTCAGC TTTACAGGCAACCGCACAGATAATCGCAACCGGACTCGCTACTATCTAGGGGCTTTAATTGATTACACAGCCGAGGACAC TCAAGACTGGCTCAAGGCCTATGTCGGAGGGGATTATCGCTATCAAAATGTGAATGCTGGGGTGCGCGCAGAAGTGGGTG GTATTGGCTACCTCAATCCTGATAAAGACTACTACAGCCGTCTCTGGGGCAATGTTGCAAAAACTTTTTCGGCAAATAAT GGCAATTCGTTTACTTTAGCGGCAGGCTTGGATTACGCGATTGACCAAGATCAGCAGATTGGCGATATTTTTGTGGGTTC GACCGGGAGTCGAGCAACGGTAAGTGCGGCGGCTCGACTTGGGGGAGTGACTTTATCGGCAGATCAAAACTTCGGCGGTC TTTTGCCCAACTCTGATGAAAGTAACCTGACGCTCAGGTTAGGAACTCAATTAGGAGATAACTTCTCTCTGTCTGGTTAT TACACACCTTTTGATGAGGATACTGTGGTTGCTAGATATGGTGTAAACGCAGGGATTAAATTTGGATCTTTTTACAATAG TCCCAGCTTAGTCTTTGGTTGGAGTCAGGACGAGTATAAGTTTGCCACAGGAACTTTTACGGATGATCGTTTCACGGTCT CCTTTAGCACGGGTCAGCCTAATGCTCCTTTTGTGACGGGCACTCGCCGCTAG
Upstream 100 bases:
>100_bases ACATCATTGATACTGTTGTTTTGATAAGGTTAGCTTGTCGATAACTCAAATTTAACATTGTGAAATATTATCGAGTAATC TCTGCCTTGAATTTTATCGA
Downstream 100 bases:
>100_bases TTACTTTTGAGACTAAGTTGCTATTGGGGTAGACCCCAATGATTGATACGTTCCGTTAACCAATTGCTATTTTGCCAATC GGTTACTGTTTTCTGGAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 950; Mature: 949
Protein sequence:
>950_residues MAQQNGVELKAKPNFRPGCITSYYFCVSVVDLSSDHLFFTIHSKMTLPRSRPILRSLLCAMASTPFATLAAAMEATNVSV DNSLEQVNLSPTSAPEAQAVQSPAEVSTVVQNTVPGPNPKQQLIARAPATTAQDESKPSAEAPPTEQLIAQVPTTGNSGA PATGLSSAELIQLAQLLSQLGDLSALQEQLSNIQEELGEIRSVVRDLQQESVINSQAPPRLSEPIQQQERVATNQENSRP VATSSPVSNTEASTETDSDVAQIPVLTPDPIPEEEIPEPETDDFLQKMPLNRVNPLITTQNLDGVPISHFSDWEIAASGL LSDATTSDVNVDGFARLDSDIFQGTTADNVAVTDFRGTYVRLRSAAQDREVETEIDQAVTLGGYLYQFTLTGGCDILDPG GGGSDETCSFLPPVAFDPQSYDPDTLLPGRLLDSGIAFGGVVSEENLAFIKQPGFQRGLPGQEVGIELNVPNSGIVAVGP ETGRQGQTIRRENLDNTYSVGIANVRQVLKQNDQEAVLGRTVRGFAAIPNDEDFGLDSAVQLATLLLPDVDPALEGGDAP PNPNVNANLFSAANNSRLPANSFTAYQGSVSRAESVTDLSTPPEDIPAATSNSFWVGLSPVLDREIEILEDGSRFKDFSG PRLVAAAYGEGGAEVADNLSAQVAATLLNEVGGVDQQLLLDFDDIQDAYTQIGLAFFERDATQIIKTRYSERTNYVPHLS FTGNRTDNRNRTRYYLGALIDYTAEDTQDWLKAYVGGDYRYQNVNAGVRAEVGGIGYLNPDKDYYSRLWGNVAKTFSANN GNSFTLAAGLDYAIDQDQQIGDIFVGSTGSRATVSAAARLGGVTLSADQNFGGLLPNSDESNLTLRLGTQLGDNFSLSGY YTPFDEDTVVARYGVNAGIKFGSFYNSPSLVFGWSQDEYKFATGTFTDDRFTVSFSTGQPNAPFVTGTRR
Sequences:
>Translated_950_residues MAQQNGVELKAKPNFRPGCITSYYFCVSVVDLSSDHLFFTIHSKMTLPRSRPILRSLLCAMASTPFATLAAAMEATNVSV DNSLEQVNLSPTSAPEAQAVQSPAEVSTVVQNTVPGPNPKQQLIARAPATTAQDESKPSAEAPPTEQLIAQVPTTGNSGA PATGLSSAELIQLAQLLSQLGDLSALQEQLSNIQEELGEIRSVVRDLQQESVINSQAPPRLSEPIQQQERVATNQENSRP VATSSPVSNTEASTETDSDVAQIPVLTPDPIPEEEIPEPETDDFLQKMPLNRVNPLITTQNLDGVPISHFSDWEIAASGL LSDATTSDVNVDGFARLDSDIFQGTTADNVAVTDFRGTYVRLRSAAQDREVETEIDQAVTLGGYLYQFTLTGGCDILDPG GGGSDETCSFLPPVAFDPQSYDPDTLLPGRLLDSGIAFGGVVSEENLAFIKQPGFQRGLPGQEVGIELNVPNSGIVAVGP ETGRQGQTIRRENLDNTYSVGIANVRQVLKQNDQEAVLGRTVRGFAAIPNDEDFGLDSAVQLATLLLPDVDPALEGGDAP PNPNVNANLFSAANNSRLPANSFTAYQGSVSRAESVTDLSTPPEDIPAATSNSFWVGLSPVLDREIEILEDGSRFKDFSG PRLVAAAYGEGGAEVADNLSAQVAATLLNEVGGVDQQLLLDFDDIQDAYTQIGLAFFERDATQIIKTRYSERTNYVPHLS FTGNRTDNRNRTRYYLGALIDYTAEDTQDWLKAYVGGDYRYQNVNAGVRAEVGGIGYLNPDKDYYSRLWGNVAKTFSANN GNSFTLAAGLDYAIDQDQQIGDIFVGSTGSRATVSAAARLGGVTLSADQNFGGLLPNSDESNLTLRLGTQLGDNFSLSGY YTPFDEDTVVARYGVNAGIKFGSFYNSPSLVFGWSQDEYKFATGTFTDDRFTVSFSTGQPNAPFVTGTRR >Mature_949_residues AQQNGVELKAKPNFRPGCITSYYFCVSVVDLSSDHLFFTIHSKMTLPRSRPILRSLLCAMASTPFATLAAAMEATNVSVD NSLEQVNLSPTSAPEAQAVQSPAEVSTVVQNTVPGPNPKQQLIARAPATTAQDESKPSAEAPPTEQLIAQVPTTGNSGAP ATGLSSAELIQLAQLLSQLGDLSALQEQLSNIQEELGEIRSVVRDLQQESVINSQAPPRLSEPIQQQERVATNQENSRPV ATSSPVSNTEASTETDSDVAQIPVLTPDPIPEEEIPEPETDDFLQKMPLNRVNPLITTQNLDGVPISHFSDWEIAASGLL SDATTSDVNVDGFARLDSDIFQGTTADNVAVTDFRGTYVRLRSAAQDREVETEIDQAVTLGGYLYQFTLTGGCDILDPGG GGSDETCSFLPPVAFDPQSYDPDTLLPGRLLDSGIAFGGVVSEENLAFIKQPGFQRGLPGQEVGIELNVPNSGIVAVGPE TGRQGQTIRRENLDNTYSVGIANVRQVLKQNDQEAVLGRTVRGFAAIPNDEDFGLDSAVQLATLLLPDVDPALEGGDAPP NPNVNANLFSAANNSRLPANSFTAYQGSVSRAESVTDLSTPPEDIPAATSNSFWVGLSPVLDREIEILEDGSRFKDFSGP RLVAAAYGEGGAEVADNLSAQVAATLLNEVGGVDQQLLLDFDDIQDAYTQIGLAFFERDATQIIKTRYSERTNYVPHLSF TGNRTDNRNRTRYYLGALIDYTAEDTQDWLKAYVGGDYRYQNVNAGVRAEVGGIGYLNPDKDYYSRLWGNVAKTFSANNG NSFTLAAGLDYAIDQDQQIGDIFVGSTGSRATVSAAARLGGVTLSADQNFGGLLPNSDESNLTLRLGTQLGDNFSLSGYY TPFDEDTVVARYGVNAGIKFGSFYNSPSLVFGWSQDEYKFATGTFTDDRFTVSFSTGQPNAPFVTGTRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101940; Mature: 101809
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQNGVELKAKPNFRPGCITSYYFCVSVVDLSSDHLFFTIHSKMTLPRSRPILRSLLCA CCCCCCCEEEECCCCCCCHHHHHEEHHEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH MASTPFATLAAAMEATNVSVDNSLEQVNLSPTSAPEAQAVQSPAEVSTVVQNTVPGPNPK HHCCCHHHHHHHHHHCCCCCCCCHHEEECCCCCCCHHHHHCCHHHHHHHHHHCCCCCCHH QQLIARAPATTAQDESKPSAEAPPTEQLIAQVPTTGNSGAPATGLSSAELIQLAQLLSQL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GDLSALQEQLSNIQEELGEIRSVVRDLQQESVINSQAPPRLSEPIQQQERVATNQENSRP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC VATSSPVSNTEASTETDSDVAQIPVLTPDPIPEEEIPEPETDDFLQKMPLNRVNPLITTQ CCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEC NLDGVPISHFSDWEIAASGLLSDATTSDVNVDGFARLDSDIFQGTTADNVAVTDFRGTYV CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHH RLRSAAQDREVETEIDQAVTLGGYLYQFTLTGGCDILDPGGGGSDETCSFLPPVAFDPQS HHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCC YDPDTLLPGRLLDSGIAFGGVVSEENLAFIKQPGFQRGLPGQEVGIELNVPNSGIVAVGP CCCCCCCCHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECC ETGRQGQTIRRENLDNTYSVGIANVRQVLKQNDQEAVLGRTVRGFAAIPNDEDFGLDSAV CCCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCHHHH QLATLLLPDVDPALEGGDAPPNPNVNANLFSAANNSRLPANSFTAYQGSVSRAESVTDLS HHHHHHCCCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHHHHCCC TPPEDIPAATSNSFWVGLSPVLDREIEILEDGSRFKDFSGPRLVAAAYGEGGAEVADNLS CCCHHCCCCCCCCEEEECCHHHCCCHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH AQVAATLLNEVGGVDQQLLLDFDDIQDAYTQIGLAFFERDATQIIKTRYSERTNYVPHLS HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE FTGNRTDNRNRTRYYLGALIDYTAEDTQDWLKAYVGGDYRYQNVNAGVRAEVGGIGYLNP ECCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCC DKDYYSRLWGNVAKTFSANNGNSFTLAAGLDYAIDQDQQIGDIFVGSTGSRATVSAAARL CHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHCCCCCCCCEEEECCCCCCHHHHHHHHH GGVTLSADQNFGGLLPNSDESNLTLRLGTQLGDNFSLSGYYTPFDEDTVVARYGVNAGIK CCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCEEEEECCCCCEE FGSFYNSPSLVFGWSQDEYKFATGTFTDDRFTVSFSTGQPNAPFVTGTRR ECCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCEECCCCC >Mature Secondary Structure AQQNGVELKAKPNFRPGCITSYYFCVSVVDLSSDHLFFTIHSKMTLPRSRPILRSLLCA CCCCCCEEEECCCCCCCHHHHHEEHHEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH MASTPFATLAAAMEATNVSVDNSLEQVNLSPTSAPEAQAVQSPAEVSTVVQNTVPGPNPK HHCCCHHHHHHHHHHCCCCCCCCHHEEECCCCCCCHHHHHCCHHHHHHHHHHCCCCCCHH QQLIARAPATTAQDESKPSAEAPPTEQLIAQVPTTGNSGAPATGLSSAELIQLAQLLSQL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GDLSALQEQLSNIQEELGEIRSVVRDLQQESVINSQAPPRLSEPIQQQERVATNQENSRP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC VATSSPVSNTEASTETDSDVAQIPVLTPDPIPEEEIPEPETDDFLQKMPLNRVNPLITTQ CCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEC NLDGVPISHFSDWEIAASGLLSDATTSDVNVDGFARLDSDIFQGTTADNVAVTDFRGTYV CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHH RLRSAAQDREVETEIDQAVTLGGYLYQFTLTGGCDILDPGGGGSDETCSFLPPVAFDPQS HHHHHHHCCHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCC YDPDTLLPGRLLDSGIAFGGVVSEENLAFIKQPGFQRGLPGQEVGIELNVPNSGIVAVGP CCCCCCCCHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECC ETGRQGQTIRRENLDNTYSVGIANVRQVLKQNDQEAVLGRTVRGFAAIPNDEDFGLDSAV CCCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCHHHH QLATLLLPDVDPALEGGDAPPNPNVNANLFSAANNSRLPANSFTAYQGSVSRAESVTDLS HHHHHHCCCCCHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCHHHHHHHHCCC TPPEDIPAATSNSFWVGLSPVLDREIEILEDGSRFKDFSGPRLVAAAYGEGGAEVADNLS CCCHHCCCCCCCCEEEECCHHHCCCHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH AQVAATLLNEVGGVDQQLLLDFDDIQDAYTQIGLAFFERDATQIIKTRYSERTNYVPHLS HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE FTGNRTDNRNRTRYYLGALIDYTAEDTQDWLKAYVGGDYRYQNVNAGVRAEVGGIGYLNP ECCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCC DKDYYSRLWGNVAKTFSANNGNSFTLAAGLDYAIDQDQQIGDIFVGSTGSRATVSAAARL CHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHCCCCCCCCEEEECCCCCCHHHHHHHHH GGVTLSADQNFGGLLPNSDESNLTLRLGTQLGDNFSLSGYYTPFDEDTVVARYGVNAGIK CCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCEEEEECCCCCEE FGSFYNSPSLVFGWSQDEYKFATGTFTDDRFTVSFSTGQPNAPFVTGTRR ECCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA