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The map label for this gene is ycfH [C]

Identifier: 170078651

GI number: 170078651

Start: 2133977

End: 2134756

Strand: Reverse

Name: ycfH [C]

Synonym: SYNPCC7002_A2047

Alternate gene names: 170078651

Gene position: 2134756-2133977 (Counterclockwise)

Preceding gene: 170078652

Following gene: 170078650

Centisome position: 70.97

GC content: 50.51

Gene sequence:

>780_bases
ATGCAACTTGTTGACACCCATGTGCACATCAACTTCGATGTTTTCCAAGAAGATATCGAGGCGATCGCCAGTCGTTGGCG
TGCCGCTGGTGTTGCCCACTTGGTCCATTCCTGCGTCGAACCCCAAGAGTTCACTGAAATTCAAGCCCTGGTTGATCGGT
TTCCGGAGCTAAAATTTTCTGTCGGCCTGCATCCCCTCGATGCAGATAAGTGGACAGAGACCATGGCTGCAGAAATCAAG
GCCTTGGCCCAGAGTGATTCGCGGATCGTTGCCCTTGGGGAAATGGGCCTAGACTTTTTTAAGGCGGAAAATCACCGTCA
CCAGGAAAAAGTACTCAGGGCGCAACTTGAGCTGGCGGCGGAACTCGATTTGCCGGTGATCATTCACTGTCGTGATGCAG
CGGCAGAATTGTTAGCAATCCTCAAAGAGTTTCAGGCGAATGATCAACCCGTGCGCGGTGTAATGCATTGTTGGAGTGGC
ACCCCCGAAGAAACTCAATGGTTTCTTGACCTTGGTTTTTTCGTTAGCTTTAGTGGTGTGGTGACTTTTAAAAATGCTGA
ACAGGTCAGGGATTCCGCTCGTCTAGTGCCCGATGATCGCCTTTTGATCGAAACAGATTGTCCTTTTCTTGCCCCTGTAC
CCAAACGGGGAAAGCGAAATGAACCAGCCTTTGTCCGCCATGTGGCAGAATACCTTGCCCAATTACGGGAAACTTCTTTG
GAAACCCTTGCCCAACAAACGACAGCTAATGCCCGCCAGCTGTTTCGGCTGCATTTCTAA

Upstream 100 bases:

>100_bases
AGCAACTGGACAAGTGGCCGCCTAGGACGAGAGAGCGGTCGCGTTCTCTGGGGTTTTCCCTATTTGCTAATCATTTGAAG
GAGCCGCTGTCACTTTTACC

Downstream 100 bases:

>100_bases
ATATCTTTTTTATTTTGTCGGCATTCTCGTCACCTTAGGATTCAACCTAGGGATCAGAGAAGGTCGCATTCTGCTGTAGG
AGCTTTTGTCCCGAACTATC

Product: putative deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQLVDTHVHINFDVFQEDIEAIASRWRAAGVAHLVHSCVEPQEFTEIQALVDRFPELKFSVGLHPLDADKWTETMAAEIK
ALAQSDSRIVALGEMGLDFFKAENHRHQEKVLRAQLELAAELDLPVIIHCRDAAAELLAILKEFQANDQPVRGVMHCWSG
TPEETQWFLDLGFFVSFSGVVTFKNAEQVRDSARLVPDDRLLIETDCPFLAPVPKRGKRNEPAFVRHVAEYLAQLRETSL
ETLAQQTTANARQLFRLHF

Sequences:

>Translated_259_residues
MQLVDTHVHINFDVFQEDIEAIASRWRAAGVAHLVHSCVEPQEFTEIQALVDRFPELKFSVGLHPLDADKWTETMAAEIK
ALAQSDSRIVALGEMGLDFFKAENHRHQEKVLRAQLELAAELDLPVIIHCRDAAAELLAILKEFQANDQPVRGVMHCWSG
TPEETQWFLDLGFFVSFSGVVTFKNAEQVRDSARLVPDDRLLIETDCPFLAPVPKRGKRNEPAFVRHVAEYLAQLRETSL
ETLAQQTTANARQLFRLHF
>Mature_259_residues
MQLVDTHVHINFDVFQEDIEAIASRWRAAGVAHLVHSCVEPQEFTEIQALVDRFPELKFSVGLHPLDADKWTETMAAEIK
ALAQSDSRIVALGEMGLDFFKAENHRHQEKVLRAQLELAAELDLPVIIHCRDAAAELLAILKEFQANDQPVRGVMHCWSG
TPEETQWFLDLGFFVSFSGVVTFKNAEQVRDSARLVPDDRLLIETDCPFLAPVPKRGKRNEPAFVRHVAEYLAQLRETSL
ETLAQQTTANARQLFRLHF

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=29.3233082706767, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI225903424, Length=273, Percent_Identity=27.8388278388278, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=28.0442804428044, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=25.6505576208178, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI225903439, Length=225, Percent_Identity=27.5555555555556, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=41.3793103448276, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=32.1705426356589, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=32.319391634981, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.8169014084507, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.7924528301887, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17543026, Length=221, Percent_Identity=28.0542986425339, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17565396, Length=300, Percent_Identity=21.6666666666667, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI221330018, Length=303, Percent_Identity=26.0726072607261, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24586117, Length=278, Percent_Identity=27.6978417266187, Blast_Score=87, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29394; Mature: 29394

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVDTHVHINFDVFQEDIEAIASRWRAAGVAHLVHSCVEPQEFTEIQALVDRFPELKFS
CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
VGLHPLDADKWTETMAAEIKALAQSDSRIVALGEMGLDFFKAENHRHQEKVLRAQLELAA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHCCCHHHHHHHHHHHHHHH
ELDLPVIIHCRDAAAELLAILKEFQANDQPVRGVMHCWSGTPEETQWFLDLGFFVSFSGV
HCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCE
VTFKNAEQVRDSARLVPDDRLLIETDCPFLAPVPKRGKRNEPAFVRHVAEYLAQLRETSL
EEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ETLAQQTTANARQLFRLHF
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLVDTHVHINFDVFQEDIEAIASRWRAAGVAHLVHSCVEPQEFTEIQALVDRFPELKFS
CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEE
VGLHPLDADKWTETMAAEIKALAQSDSRIVALGEMGLDFFKAENHRHQEKVLRAQLELAA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHCHHHHHHCCCHHHHHHHHHHHHHHH
ELDLPVIIHCRDAAAELLAILKEFQANDQPVRGVMHCWSGTPEETQWFLDLGFFVSFSGV
HCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCE
VTFKNAEQVRDSARLVPDDRLLIETDCPFLAPVPKRGKRNEPAFVRHVAEYLAQLRETSL
EEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ETLAQQTTANARQLFRLHF
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]