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The map label for this gene is rpoC1

Identifier: 170078648

GI number: 170078648

Start: 2128434

End: 2130344

Strand: Reverse

Name: rpoC1

Synonym: SYNPCC7002_A2044

Alternate gene names: 170078648

Gene position: 2130344-2128434 (Counterclockwise)

Preceding gene: 170078649

Following gene: 170078647

Centisome position: 70.82

GC content: 49.56

Gene sequence:

>1911_bases
ATGAAAAGTCAACAAGAGCAACATTTCGATTACGTCAAAATTGGTATTGCTTCTCCTGAACGGGTACGCCAGTGGGGAGA
GCGGACTTTACCAAATGGTCAAACCGTCGGCGAGGTTACAAAACCAGAAACTATTAACTACCGGACGTTAAAACCGGAAA
TGGATGGTTTATTTTGTGAGCGGATTTTTGGCCCGGCCAAGGACTGGGAATGCCACTGTGGTAAATACAAGCGGGTTAGA
CACCGGGGAATTGTCTGTGAGCGTTGTGGCGTAGAGGTCACTGAATCCCGGGTGCGTCGTCATCGCATGGGGTACATCAA
GCTCGCTGCGGCAGTTACCCACGTTTGGTATCTCAAGGGGATCCCCAGCTACCTCAGCATTTTGCTGGATATGGCACTGC
GGGATGTGGAGCAGATTGTTTATTTCAATGCCTATGTCGTCCTCGATCCGGGTAATGCGACTAACCTCAGCTATAAGCAA
CTATTGACGGAAGATCAGTGGTTAGAAATTGAAGAGCAACTCTACAGCGAAGATTCTCAGTTAGAGGATGTGGAAGTTGG
CATTGGGGCTGAAGCGATTGAGCGTTTGTTGCAAGAGCTTGAGTTAGAGGCGGTTGCTGAGGAACTACGGGAAGGCATTG
CTAATTCTAAAGGTCAAAAACGGGCGAAGTTAATTAAACGTTTGCGCGTTATTGATAACTTTATTGCGACTGGGGCACGC
CCTGAATGGATGGTTCTGAACAGTATCCCTGTCATTCCACCGGATCTGCGCCCGATGGTGCAGCTCGATGGGGGCCGCTT
TGCCACCTCCGATTTGAATGATCTTTATCGCCGCGTTATCAATCGAAACAACCGTCTCGCTCGATTACAAGAAATTCTGG
CACCGGAAATTATCGTCCGCAACGAAAAACGGATGTTGCAAGAGGCGGTGGATGCGCTAATTGACAATGGCCGTCGTGGT
CGGACAGTTGTCGGTGCAAATAACCGTCCCCTCAAGTCTTTATCGGACATTATTGAAGGGAAGCAAGGTCGTTTCCGGCA
AAACCTCCTTGGGAAACGGGTTGACTATTCTGGTCGTTCTGTCATCGTGGTTGGGCCAAAGCTAAAAATTTATCAGTGTG
GTCTGCCCCGTGAGATGGCCATTGAACTGTTCCAGCCTTTTGTAATTCAGCGACTGATTAAGAGCACTATTGTCAGCAAT
ATTAAGGCGGCGAAAAAGCTGATTCAACGGGGGGATGAAAGTGTTTGGGATGTGCTCGCTGAAGTAATTACGGGTCACCC
TGTACTACTCAACCGGGCACCAACGCTACACCGACTAGGGATTCAGGCTTTTGAACCGATTCTCGTGGAAGGTCGCGCGA
TTCAGTTGCACCCGTTGGTTTGTCCTGCGTTTAACGCTGACTTTGATGGCGACCAAATGGCGGTGCACGTGCCTTTGTCT
TTGGAGGCCCAAGCTGAGGCTCGTCTGTTGATGCTGGCTTGTCATAATATTCTTTCGCCCGCTACGGGTAAACCCATTGT
GGCTCCTTCCCAGGATATGGTTTTAGGTTGTTATTATTTGACGGCGGAAAATCCAGGGGCACAGCGGGGTGCGGGACGCT
ACTTTAGCAGTATGGATGATGCGTTGCGGGCCTATGAGCAAGGGGATGTGGATTTGCATGCCTATGTATGGTTGCGCTAC
CTCGGCGATGTTGAGACCAATGAGGCGGATGATCGGGTGTTGGAATCTGAAACGTTAGAGGATGGTTCTATTTTGAAAAT
TTACCGTGAACGGAAGGTTCGGGAAACGGCAGAGGGTGAAATGATTAGTCAGTTTATCCGCACAACGCCGGGACGAATCA
TCTACAACAAGACGATCCAAGATGCCCTTGATTTAACCGAGCGGACGCTCCCAGAAGGACTACCTGTATAA

Upstream 100 bases:

>100_bases
GTAGTGGGGCCAGCATTTTGCCAAATGTGCCCCATGCTTTTTGAAGCTTGTATAGGCCAAATTTTATTCGTCGAGTCGTT
TTTAAAGAGCAGTTACGGGC

Downstream 100 bases:

>100_bases
GGTGACTGTAAGCGGAAAGAAAAGGGCGATCGCCTTTTGCTTTCTTTAAGTTTTTCTTCTTAAGTTATTAACACCAGAGA
TCACAAAAAAACCATGACCA

Product: DNA-directed RNA polymerase subunit gamma

Products: NA

Alternate protein names: RNAP subunit gamma; RNA polymerase subunit gamma; Transcriptase subunit gamma

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR
HRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKGIPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQ
LLTEDQWLEIEEQLYSEDSQLEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRG
RTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSN
IKAAKKLIQRGDESVWDVLAEVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDDALRAYEQGDVDLHAYVWLRY
LGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGEMISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV

Sequences:

>Translated_636_residues
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR
HRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKGIPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQ
LLTEDQWLEIEEQLYSEDSQLEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRG
RTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSN
IKAAKKLIQRGDESVWDVLAEVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDDALRAYEQGDVDLHAYVWLRY
LGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGEMISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV
>Mature_636_residues
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDWECHCGKYKRVR
HRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKGIPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQ
LLTEDQWLEIEEQLYSEDSQLEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRG
RTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSN
IKAAKKLIQRGDESVWDVLAEVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDDALRAYEQGDVDLHAYVWLRY
LGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGEMISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily

Homologues:

Organism=Homo sapiens, GI4505939, Length=576, Percent_Identity=26.7361111111111, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI39725938, Length=332, Percent_Identity=29.5180722891566, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI103471997, Length=229, Percent_Identity=32.3144104803493, Blast_Score=102, Evalue=1e-21,
Organism=Escherichia coli, GI2367335, Length=586, Percent_Identity=58.3617747440273, Blast_Score=719, Evalue=0.0,
Organism=Caenorhabditis elegans, GI71987878, Length=310, Percent_Identity=30.3225806451613, Blast_Score=150, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI25145495, Length=330, Percent_Identity=30.9090909090909, Blast_Score=144, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6320061, Length=552, Percent_Identity=25.9057971014493, Blast_Score=141, Evalue=4e-34,
Organism=Saccharomyces cerevisiae, GI6324690, Length=351, Percent_Identity=30.4843304843305, Blast_Score=138, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6324917, Length=293, Percent_Identity=26.2798634812287, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17530899, Length=307, Percent_Identity=30.6188925081433, Blast_Score=148, Evalue=1e-35,
Organism=Drosophila melanogaster, GI281360912, Length=317, Percent_Identity=29.0220820189274, Blast_Score=119, Evalue=9e-27,
Organism=Drosophila melanogaster, GI17647875, Length=355, Percent_Identity=27.6056338028169, Blast_Score=108, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOC1_SYNP2 (Q55085)

Other databases:

- EMBL:   CP000951
- EMBL:   U52345
- RefSeq:   YP_001735286.1
- ProteinModelPortal:   Q55085
- SMR:   Q55085
- GeneID:   6055515
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2044
- HOGENOM:   HBG285548
- OMA:   HVWYLKG
- ProtClustDB:   PRK02625
- HAMAP:   MF_01323
- InterPro:   IPR000722
- InterPro:   IPR006592
- InterPro:   IPR007080
- InterPro:   IPR007066
- InterPro:   IPR012755
- SMART:   SM00663
- TIGRFAMs:   TIGR02387

Pfam domain/function: PF04997 RNA_pol_Rpb1_1; PF00623 RNA_pol_Rpb1_2; PF04983 RNA_pol_Rpb1_3

EC number: =2.7.7.6

Molecular weight: Translated: 72026; Mature: 72026

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCE
CCCCCHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKG
HHCCCCCCCCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
IPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQLLTEDQWLEIEEQLYSEDSQ
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCC
LEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
CCEEEECCCCCCCCCCCCCEEECCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCC
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
CHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCE
VIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSNIKAAKKLIQRGDESVWDVLA
EEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
HHHCCCCEEECCCCHHHHHHHHHHCHHEECCCEEEEECEECCCCCCCCCCCCEEEEECCC
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
ALRAYEQGDVDLHAYVWLRYLGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGE
HHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV
HHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCE
CCCCCHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKG
HHCCCCCCCCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
IPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQLLTEDQWLEIEEQLYSEDSQ
HHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCC
LEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
CCEEEECCCCCCCCCCCCCEEECCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCC
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
CHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCE
VIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSNIKAAKKLIQRGDESVWDVLA
EEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
EVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
HHHCCCCEEECCCCHHHHHHHHHHCHHEECCCEEEEECEECCCCCCCCCCCCEEEEECCC
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDD
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH
ALRAYEQGDVDLHAYVWLRYLGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGE
HHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV
HHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA