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The map label for this gene is ygdD [C]

Identifier: 170078620

GI number: 170078620

Start: 2095821

End: 2096201

Strand: Direct

Name: ygdD [C]

Synonym: SYNPCC7002_A2016

Alternate gene names: 170078620

Gene position: 2095821-2096201 (Clockwise)

Preceding gene: 170078619

Following gene: 170078621

Centisome position: 69.67

GC content: 53.54

Gene sequence:

>381_bases
ATGACCCGTTTTTTCTTAGTTATTGCCCCCATCCTTGCTGGTCTCGCCGTCGCCGCTGGTGCCTTTGCCAGCCATGGCCT
TAAAGAAACCCTCGACGCCAATGCCCTTGATATCTGGGAAACTGCCGCTAAATACCAAATGTATCAGGCGATCGCCTTAC
TGCTGGTGGGCCTATTTTCTGTCCAGGGGTCGTTCCCCCAAAGTTGGCTCAATGGGGCTGGCATTGCCTTTATTGTCGGG
ATTGTGCTCTTTTCCGGTAGCCTCTATGCCTTGAGTTTAAGTGGGGTGAAAATTTTGGGGGCCATTACACCGCTCGGTGG
GGCGGCTTTCATCGTTGGCTGGATCTGTTTGGCGATCGCCGGTTGGCAGTTTAGCCGCTAA

Upstream 100 bases:

>100_bases
TAAAGGGATGCAACGGGTTTCGGAAAAGGCTGGTTTTACCCTCAAGCGCCAAAATTTTGAAGTGGTTAAAGCGACTCTAC
AACTCAATTAAACAAAGACT

Downstream 100 bases:

>100_bases
AGAATTTTGGCAAAGCGATTAAGTTTGGACAGATTTTGTGAATTTGCTGTAACTTCGTTTTCAATTCCTCGCTAAGATTC
AAGGAACTACGAATCTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTRFFLVIAPILAGLAVAAGAFASHGLKETLDANALDIWETAAKYQMYQAIALLLVGLFSVQGSFPQSWLNGAGIAFIVG
IVLFSGSLYALSLSGVKILGAITPLGGAAFIVGWICLAIAGWQFSR

Sequences:

>Translated_126_residues
MTRFFLVIAPILAGLAVAAGAFASHGLKETLDANALDIWETAAKYQMYQAIALLLVGLFSVQGSFPQSWLNGAGIAFIVG
IVLFSGSLYALSLSGVKILGAITPLGGAAFIVGWICLAIAGWQFSR
>Mature_125_residues
TRFFLVIAPILAGLAVAAGAFASHGLKETLDANALDIWETAAKYQMYQAIALLLVGLFSVQGSFPQSWLNGAGIAFIVGI
VLFSGSLYALSLSGVKILGAITPLGGAAFIVGWICLAIAGWQFSR

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=125, Percent_Identity=33.6, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13150; Mature: 13018

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFFLVIAPILAGLAVAAGAFASHGLKETLDANALDIWETAAKYQMYQAIALLLVGLFS
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VQGSFPQSWLNGAGIAFIVGIVLFSGSLYALSLSGVKILGAITPLGGAAFIVGWICLAIA
HCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHH
GWQFSR
CCCCCC
>Mature Secondary Structure 
TRFFLVIAPILAGLAVAAGAFASHGLKETLDANALDIWETAAKYQMYQAIALLLVGLFS
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VQGSFPQSWLNGAGIAFIVGIVLFSGSLYALSLSGVKILGAITPLGGAAFIVGWICLAIA
HCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHH
GWQFSR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA