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The map label for this gene is desF

Identifier: 170078593

GI number: 170078593

Start: 2070390

End: 2071232

Strand: Reverse

Name: desF

Synonym: SYNPCC7002_A1989

Alternate gene names: NA

Gene position: 2071232-2070390 (Counterclockwise)

Preceding gene: 170078594

Following gene: 170078589

Centisome position: 68.86

GC content: 54.21

Gene sequence:

>843_bases
ATGACCCAATCTGTGCAACACCCCACCCAAAAACCGACCCTAGACTGGGTTGCCGTGTTCTTTTTTGGCGCGGTTCATCT
CCTGGCCCTTGGTTTGGCCCCCTTCTTTTTCTCTTGGTCGGCGATCGCCGTTTGTCTGTTTCTCCACTGGCTCTTTGGCA
GTATTGGCATTTGTTTGGGCTACCATCGCCTGTTGAGCCACCGCAGCCTCAAAGTCCCGCAATGGCTGGAATATACCCTG
GCGTTTATTGGTGCCCTTGCCCTCCAGGGTGGCCCTATTTTTTGGGTGGCGGGCCACCGGCTGCACCATGCCCACACGGA
AGATGAAGTTAAAGACCCCTATTCCGCCAAACGGGGTTTTTGGTGGAGCCATATGCTCTGGATTTTCTACCCCGATCAAC
AATTTTTTGATGCTGACCAATACAGCCGCTATGCCCAGGATCTCGCGAAACAGCCCTTTTACCGTTGGCTAAACCGCAAT
TTTCTGTTGCTACAAATTCCTTTGGCGATCGCCCTTTATCTCCTCGGCGGTTGGTCTTGGGTCGTGTATGGGATGCTGGT
GCGGGCGGTGTTGCTATGGCATAGCACCTGGTTTATCAACTCTGTCACCCATGTGTGGGGCTACCGCAGTCACGCAAGCG
ACGATAATTCCCGTAATCTCTGGTGGGCGGCAATTCTCACCTATGGCGAAGGCTGGCATAACAACCACCATGCCTATCCC
AGTGTGGCGAAAGCCGGTTGGCGCTGGTGGGAAATCGATGTTACCTGGTGGGCCATCTGGCTCCTACAACGGCTTGGTCT
CGCCACGAAAGTCATTTTGCCGCCAGCCGTCGTCACAGAATAA

Upstream 100 bases:

>100_bases
AAAACCTTCTCCAAGGCGATTTAGCGATCGCCACCAGTTCCCTGGGGGAGGATCAACCCACCGATATTCCCCTTTGTCTT
GTTCTATTGTTTGAGAATTC

Downstream 100 bases:

>100_bases
ATTTGCGTTTGATCATTACCGCCAATTCAAAAAAATAACCCCCCATTTTCCGTTTGGCATGGGGGATTTTTGTAGCAATA
TCAATCGTGGTTAGCCTAGC

Product: syn-2, delta 9 acyl-lipid fatty acid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Subfamily; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Fatty Acid Desaturase Family Protein; Stearoyl-CoA Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Fatty Acid Desaturase Protein; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTQSVQHPTQKPTLDWVAVFFFGAVHLLALGLAPFFFSWSAIAVCLFLHWLFGSIGICLGYHRLLSHRSLKVPQWLEYTL
AFIGALALQGGPIFWVAGHRLHHAHTEDEVKDPYSAKRGFWWSHMLWIFYPDQQFFDADQYSRYAQDLAKQPFYRWLNRN
FLLLQIPLAIALYLLGGWSWVVYGMLVRAVLLWHSTWFINSVTHVWGYRSHASDDNSRNLWWAAILTYGEGWHNNHHAYP
SVAKAGWRWWEIDVTWWAIWLLQRLGLATKVILPPAVVTE

Sequences:

>Translated_280_residues
MTQSVQHPTQKPTLDWVAVFFFGAVHLLALGLAPFFFSWSAIAVCLFLHWLFGSIGICLGYHRLLSHRSLKVPQWLEYTL
AFIGALALQGGPIFWVAGHRLHHAHTEDEVKDPYSAKRGFWWSHMLWIFYPDQQFFDADQYSRYAQDLAKQPFYRWLNRN
FLLLQIPLAIALYLLGGWSWVVYGMLVRAVLLWHSTWFINSVTHVWGYRSHASDDNSRNLWWAAILTYGEGWHNNHHAYP
SVAKAGWRWWEIDVTWWAIWLLQRLGLATKVILPPAVVTE
>Mature_279_residues
TQSVQHPTQKPTLDWVAVFFFGAVHLLALGLAPFFFSWSAIAVCLFLHWLFGSIGICLGYHRLLSHRSLKVPQWLEYTLA
FIGALALQGGPIFWVAGHRLHHAHTEDEVKDPYSAKRGFWWSHMLWIFYPDQQFFDADQYSRYAQDLAKQPFYRWLNRNF
LLLQIPLAIALYLLGGWSWVVYGMLVRAVLLWHSTWFINSVTHVWGYRSHASDDNSRNLWWAAILTYGEGWHNNHHAYPS
VAKAGWRWWEIDVTWWAIWLLQRLGLATKVILPPAVVTE

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=281, Percent_Identity=27.0462633451957, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI148596961, Length=263, Percent_Identity=27.7566539923954, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI148596938, Length=151, Percent_Identity=29.8013245033113, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561774, Length=252, Percent_Identity=30.5555555555556, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17561776, Length=246, Percent_Identity=28.0487804878049, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17540878, Length=203, Percent_Identity=29.5566502463054, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321383, Length=255, Percent_Identity=30.5882352941176, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24646295, Length=291, Percent_Identity=27.1477663230241, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24646303, Length=251, Percent_Identity=29.4820717131474, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646299, Length=251, Percent_Identity=29.4820717131474, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646305, Length=251, Percent_Identity=29.4820717131474, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646301, Length=251, Percent_Identity=29.4820717131474, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646297, Length=251, Percent_Identity=29.4820717131474, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24646500, Length=250, Percent_Identity=27.6, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24662393, Length=269, Percent_Identity=28.996282527881, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21358573, Length=289, Percent_Identity=30.4498269896194, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21358571, Length=244, Percent_Identity=28.2786885245902, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32747; Mature: 32616

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSVQHPTQKPTLDWVAVFFFGAVHLLALGLAPFFFSWSAIAVCLFLHWLFGSIGICLG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHRLLSHRSLKVPQWLEYTLAFIGALALQGGPIFWVAGHRLHHAHTEDEVKDPYSAKRGF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHCCC
WWSHMLWIFYPDQQFFDADQYSRYAQDLAKQPFYRWLNRNFLLLQIPLAIALYLLGGWSW
CEEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
VVYGMLVRAVLLWHSTWFINSVTHVWGYRSHASDDNSRNLWWAAILTYGEGWHNNHHAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCC
SVAKAGWRWWEIDVTWWAIWLLQRLGLATKVILPPAVVTE
CHHHCCCEEEEEHHHHHHHHHHHHHCCHHEECCCCHHCCC
>Mature Secondary Structure 
TQSVQHPTQKPTLDWVAVFFFGAVHLLALGLAPFFFSWSAIAVCLFLHWLFGSIGICLG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHRLLSHRSLKVPQWLEYTLAFIGALALQGGPIFWVAGHRLHHAHTEDEVKDPYSAKRGF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHCCC
WWSHMLWIFYPDQQFFDADQYSRYAQDLAKQPFYRWLNRNFLLLQIPLAIALYLLGGWSW
CEEEEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
VVYGMLVRAVLLWHSTWFINSVTHVWGYRSHASDDNSRNLWWAAILTYGEGWHNNHHAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCC
SVAKAGWRWWEIDVTWWAIWLLQRLGLATKVILPPAVVTE
CHHHCCCEEEEEHHHHHHHHHHHHHCCHHEECCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA