Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is yueF [H]

Identifier: 170078569

GI number: 170078569

Start: 2047314

End: 2048435

Strand: Direct

Name: yueF [H]

Synonym: SYNPCC7002_A1964

Alternate gene names: 170078569

Gene position: 2047314-2048435 (Clockwise)

Preceding gene: 170078568

Following gene: 170078570

Centisome position: 68.06

GC content: 48.48

Gene sequence:

>1122_bases
ATGTCTGAGCGGAAAATTACAATATCTTTTTCAACGCTGCTGTTGATTGTCGGGGCAGTGCTATTGCTATTTTTACTCTG
GCAATTACGTAGTTTACTGGTTGTGCTCATGATTGCCGTCGTCATTGCAGCGACCCTTGCACCAGTGATTACCATCGCTG
AATCTTTCCGGGTGCCCCGTTGGCTGGCAGTGATCGGTGTGTACCTCGGCTTAATCTCAATTCTCACGGGGGTAGTTTTA
CTCATTGGCCCCACGGTAGTTGATCAAATTCAAAAGTTGATCCGGAAGCTACCCCTATATTTAGAAATTGTTGGGGTTTT
GGTTCAATCCTGGGCCGTGCGCTTGGGCATGACAGAGCCACAAGTTTTAGAACAATTGAACCGTCTTTTTGATTTGCAAG
CGTTGACAGCCTGGGCTTTTCGTTCTTCCCAAGAGCTGTTGATTCGTTCCTACGGCATTACGCGAGGGGTCATTGGGGGC
ATTTTAAGCTTGATTCTGGCGTTTATGCTCTCTGGTTATATGCTGTCTGGTTCTGACAAATTAATTAAAGGCTTTGTCAG
TCTTTTTCCGGCTCCCTGGGATGAACAACTTCTGGAACAGGTACAGCCCATGAGCGAGCGGATGGGAAGTTATATTCAGG
GTCGGATTGTGGTTTCGGGGATTCTCGGCATTGTCATTACCATTGGCCTAAGGCTGCTGGGGATTTCAGAATTAGCCCTC
GGTTTGGGGGTGATCGCGGCGGTGACAAATTTAATTCCGTTTTTTGGGCCTGTGCTAGGTGCTGTGCCGGCTTTGATTGT
GGCGATCGCCCAGGGAGGATGGACATTTTTATCCGTCCTACTGCTTTTTACCTTGATCCAAAACCTCGAAACCTATGTAT
TAGATCCGTTATTAGTCGGTTCTTCGGTCAAAGTGAACCCGCTTTATCAGTTGCTGGCGGTTTTGGGAGGGGCCCAGGTG
CTGGGAATTTTAGGCGCGGTGATTGTGCCACCCTGGGTTGCGGGAGCCGCTGTACTGCTCGATAATCTTTACCTCAAAAC
AAAACCATTACCCGTGTCCCTCACTTTAACGGCGACTCCATCCCTGGCCGACAGCCATAAATCTGAGAAAAATCAAGTCT
AG

Upstream 100 bases:

>100_bases
TATTAACGACATATTCTCGAAAGAAAAATAGCTTTTGTGTGACATTCAAGCAACTTTGCCCTGACAATGGGAACAATTCT
GACCAATAGCAAAATTCAGT

Downstream 100 bases:

>100_bases
GTAGCAATTATTTTGGCGTTCTCTGACAAATTTGCTCTCCCTTGTTCTGTTTTTAAAGTTTTGAAACGGAAAAATTGTTG
AAATCTATGTAAATTAATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVL
LIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGG
ILSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL
GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQV
LGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV

Sequences:

>Translated_373_residues
MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVL
LIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGG
ILSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL
GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQV
LGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV
>Mature_372_residues
SERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVLL
IGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGI
LSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELALG
LGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQVL
GILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40111; Mature: 39980

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPR
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
WLAVIGVYLGLISILTGVVLLIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH
QVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGILSLILAFMLSGYMLSGSDK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEECCCHH
LIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSVKVNPLYQLLAVLGGAQVLGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
SLADSHKSEKNQV
CHHHHCCCCCCCC
>Mature Secondary Structure 
SERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPR
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
WLAVIGVYLGLISILTGVVLLIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH
QVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGILSLILAFMLSGYMLSGSDK
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEECCCHH
LIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSVKVNPLYQLLAVLGGAQVLGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
SLADSHKSEKNQV
CHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]