| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is yueF [H]
Identifier: 170078569
GI number: 170078569
Start: 2047314
End: 2048435
Strand: Direct
Name: yueF [H]
Synonym: SYNPCC7002_A1964
Alternate gene names: 170078569
Gene position: 2047314-2048435 (Clockwise)
Preceding gene: 170078568
Following gene: 170078570
Centisome position: 68.06
GC content: 48.48
Gene sequence:
>1122_bases ATGTCTGAGCGGAAAATTACAATATCTTTTTCAACGCTGCTGTTGATTGTCGGGGCAGTGCTATTGCTATTTTTACTCTG GCAATTACGTAGTTTACTGGTTGTGCTCATGATTGCCGTCGTCATTGCAGCGACCCTTGCACCAGTGATTACCATCGCTG AATCTTTCCGGGTGCCCCGTTGGCTGGCAGTGATCGGTGTGTACCTCGGCTTAATCTCAATTCTCACGGGGGTAGTTTTA CTCATTGGCCCCACGGTAGTTGATCAAATTCAAAAGTTGATCCGGAAGCTACCCCTATATTTAGAAATTGTTGGGGTTTT GGTTCAATCCTGGGCCGTGCGCTTGGGCATGACAGAGCCACAAGTTTTAGAACAATTGAACCGTCTTTTTGATTTGCAAG CGTTGACAGCCTGGGCTTTTCGTTCTTCCCAAGAGCTGTTGATTCGTTCCTACGGCATTACGCGAGGGGTCATTGGGGGC ATTTTAAGCTTGATTCTGGCGTTTATGCTCTCTGGTTATATGCTGTCTGGTTCTGACAAATTAATTAAAGGCTTTGTCAG TCTTTTTCCGGCTCCCTGGGATGAACAACTTCTGGAACAGGTACAGCCCATGAGCGAGCGGATGGGAAGTTATATTCAGG GTCGGATTGTGGTTTCGGGGATTCTCGGCATTGTCATTACCATTGGCCTAAGGCTGCTGGGGATTTCAGAATTAGCCCTC GGTTTGGGGGTGATCGCGGCGGTGACAAATTTAATTCCGTTTTTTGGGCCTGTGCTAGGTGCTGTGCCGGCTTTGATTGT GGCGATCGCCCAGGGAGGATGGACATTTTTATCCGTCCTACTGCTTTTTACCTTGATCCAAAACCTCGAAACCTATGTAT TAGATCCGTTATTAGTCGGTTCTTCGGTCAAAGTGAACCCGCTTTATCAGTTGCTGGCGGTTTTGGGAGGGGCCCAGGTG CTGGGAATTTTAGGCGCGGTGATTGTGCCACCCTGGGTTGCGGGAGCCGCTGTACTGCTCGATAATCTTTACCTCAAAAC AAAACCATTACCCGTGTCCCTCACTTTAACGGCGACTCCATCCCTGGCCGACAGCCATAAATCTGAGAAAAATCAAGTCT AG
Upstream 100 bases:
>100_bases TATTAACGACATATTCTCGAAAGAAAAATAGCTTTTGTGTGACATTCAAGCAACTTTGCCCTGACAATGGGAACAATTCT GACCAATAGCAAAATTCAGT
Downstream 100 bases:
>100_bases GTAGCAATTATTTTGGCGTTCTCTGACAAATTTGCTCTCCCTTGTTCTGTTTTTAAAGTTTTGAAACGGAAAAATTGTTG AAATCTATGTAAATTAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVL LIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGG ILSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQV LGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV
Sequences:
>Translated_373_residues MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVL LIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGG ILSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQV LGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV >Mature_372_residues SERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPRWLAVIGVYLGLISILTGVVLL IGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGI LSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELALG LGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQVL GILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATPSLADSHKSEKNQV
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 40111; Mature: 39980
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPR CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH WLAVIGVYLGLISILTGVVLLIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH QVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGILSLILAFMLSGYMLSGSDK HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEECCCHH LIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SSVKVNPLYQLLAVLGGAQVLGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC SLADSHKSEKNQV CHHHHCCCCCCCC >Mature Secondary Structure SERKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVITIAESFRVPR CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH WLAVIGVYLGLISILTGVVLLIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWAVRLGMTEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH QVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGILSLILAFMLSGYMLSGSDK HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEECCCHH LIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELAL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC SSVKVNPLYQLLAVLGGAQVLGILGAVIVPPWVAGAAVLLDNLYLKTKPLPVSLTLTATP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEECCC SLADSHKSEKNQV CHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]