Click here to switch to the map view.

The map label for this gene is tsf

Identifier: 170078563

GI number: 170078563

Start: 2038090

End: 2038746

Strand: Reverse

Name: tsf

Synonym: SYNPCC7002_A1958

Alternate gene names: 170078563

Gene position: 2038746-2038090 (Counterclockwise)

Preceding gene: 170078564

Following gene: 170078561

Centisome position: 67.78

GC content: 47.64

Gene sequence:

>657_bases
ATGGCACAAATTTCTGCAAAGCTTGTCAAGGAACTGCGCGATAAAACTGGCGCAGGGATGATGGATTGCAAAAAAGCGCT
TGGTGAAACCAATGGGGACATCACTAAAGCGATTGAGTGGCTCCGTCAGAAAGGGATTACCTCTGCTGAGAAAAAAGCAG
GTCGGGTAGCAGCCGAAGGACTGATCGAAAGCTATATTCACACCGGTGGTGGCATTGGTGTTCTCGTAGAAGTGAACTGC
GAAACGGATTTCGTTGCCCGTGGTGATATCTTCAAAGATCTGGCCAAAGGGATTGCGATGCAAATCGCTGCTTGTCCTAA
TGTTCAGTATGTGAAAGTCGATGACATTCCGACTGAAATTGCCGACAAAGAGCGCGAAATTGAAATGGGTCGCGATGACC
TGGCCGGTAAACCCGATAATATCAAAGAAAAGATTGTTGAAGGCCGCATTGCTAAGCGCCTCAAAGAGCTTTCTTTGATG
GATCAGCCCTACATCCGTGATCAGAATATGACGGTTGAAGAGCTTGTGAAGCAGTCGATCGCCACCATTGGTGAAAATAT
CCAAATTCGTCGTTTCCAACGGTTCGTCCTGGGCGAAGGCATTGAGAAAAAAGAAGAAGACTTCGCCGCAGAAGTCGCTG
CGCAAATGGGTCAATAG

Upstream 100 bases:

>100_bases
GAAGCAATCGATGAGTACGCCGATGAGACCGATGCATCTGAGTCTGAATAAGCGTAATATCTTCTTGAATTGACCTGATA
ATTTTTTGGTGAACAGCAAC

Downstream 100 bases:

>100_bases
GAACTCTCATTTCTGATTTGATTGTGTGTGCTTAAATATTGTCCCGCCTTCTCCATGTTATGGGGGAGGTTTTTTCTATG
GTTGATGGTCAAGGTTTGCC

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MAQISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEGLIESYIHTGGGIGVLVEVNC
ETDFVARGDIFKDLAKGIAMQIAACPNVQYVKVDDIPTEIADKEREIEMGRDDLAGKPDNIKEKIVEGRIAKRLKELSLM
DQPYIRDQNMTVEELVKQSIATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQMGQ

Sequences:

>Translated_218_residues
MAQISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEGLIESYIHTGGGIGVLVEVNC
ETDFVARGDIFKDLAKGIAMQIAACPNVQYVKVDDIPTEIADKEREIEMGRDDLAGKPDNIKEKIVEGRIAKRLKELSLM
DQPYIRDQNMTVEELVKQSIATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQMGQ
>Mature_217_residues
AQISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEGLIESYIHTGGGIGVLVEVNCE
TDFVARGDIFKDLAKGIAMQIAACPNVQYVKVDDIPTEIADKEREIEMGRDDLAGKPDNIKEKIVEGRIAKRLKELSLMD
QPYIRDQNMTVEELVKQSIATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQMGQ

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI291084500, Length=198, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI291084498, Length=100, Percent_Identity=43, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI291084502, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI171846268, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1786366, Length=284, Percent_Identity=33.0985915492958, Blast_Score=120, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17561440, Length=207, Percent_Identity=28.9855072463768, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI19921466, Length=113, Percent_Identity=40.7079646017699, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_SYNP2 (B1XQQ0)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735201.1
- ProteinModelPortal:   B1XQQ0
- SMR:   B1XQQ0
- GeneID:   6057697
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1958
- HOGENOM:   HBG713289
- OMA:   MVELSCE
- ProtClustDB:   PRK12332
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 24069; Mature: 23938

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEG
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LIESYIHTGGGIGVLVEVNCETDFVARGDIFKDLAKGIAMQIAACPNVQYVKVDDIPTEI
HHHHHHHCCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
ADKEREIEMGRDDLAGKPDNIKEKIVEGRIAKRLKELSLMDQPYIRDQNMTVEELVKQSI
HCCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
ATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQMGQ
HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEG
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LIESYIHTGGGIGVLVEVNCETDFVARGDIFKDLAKGIAMQIAACPNVQYVKVDDIPTEI
HHHHHHHCCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
ADKEREIEMGRDDLAGKPDNIKEKIVEGRIAKRLKELSLMDQPYIRDQNMTVEELVKQSI
HCCHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
ATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQMGQ
HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA