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The map label for this gene is apcA

Identifier: 170078535

GI number: 170078535

Start: 2013921

End: 2014406

Strand: Reverse

Name: apcA

Synonym: SYNPCC7002_A1930

Alternate gene names: 170078535

Gene position: 2014406-2013921 (Counterclockwise)

Preceding gene: 170078536

Following gene: 170078534

Centisome position: 66.97

GC content: 52.26

Gene sequence:

>486_bases
ATGAGTATTGTCACGAAATCCATCGTGAATGCCGACGCTGAAGCTCGTTACCTCAGCCCCGGTGAACTCGATCGCATCAA
AGCTTTTGTTACTTCTGGTGAAAGCCGTCTTCGGATCGCTGAAACCCTGACTGGCTCCCGTGAGCGCATCATCAAATCTG
CTGGTGATGCCCTCTTCCAGAAGCGCCCCGACGTTGTTTCTCCCGGCGGTAACGCTTACGGCGAAGAAATGACTGCAACT
TGCCTCCGTGACATGGACTACTATCTCCGTCTAATCACCTACGGTGTCGTTGCTGGTGATGTAACTCCCATCGAAGAAAT
CGGTCTTGTTGGCGTTCGCGAAATGTACAAGTCCTTGGGCACTCCCGTTGATGCGGTTGCTCAGGCCGTTCGTGAAATGA
AAGCTGTTGCGACTGGCATGATGTCTGGCGACGATGCAGCTGAAGCTGGTGCTTACTTTGACTATGTCATCGGAGCAATG
GAGTAA

Upstream 100 bases:

>100_bases
TAAAGAAAGCCACCATTCATTTGATAAAAAACCAGTTTAAACCTAAAATCTGGTAATTATTTACTTTATTTAGTCTCATA
TCTAGAGGAGGAATCCATAG

Downstream 100 bases:

>100_bases
TCATAAAATTTGATTACTTTCTCCATAGTGGTTTTTACCCTCTGGAACTTCGTTAAGACCTACTAAGATAAGGAATTATA
ACAATGCAAGACGCAATTAC

Product: allophycocyanin alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSIVTKSIVNADAEARYLSPGELDRIKAFVTSGESRLRIAETLTGSRERIIKSAGDALFQKRPDVVSPGGNAYGEEMTAT
CLRDMDYYLRLITYGVVAGDVTPIEEIGLVGVREMYKSLGTPVDAVAQAVREMKAVATGMMSGDDAAEAGAYFDYVIGAM
E

Sequences:

>Translated_161_residues
MSIVTKSIVNADAEARYLSPGELDRIKAFVTSGESRLRIAETLTGSRERIIKSAGDALFQKRPDVVSPGGNAYGEEMTAT
CLRDMDYYLRLITYGVVAGDVTPIEEIGLVGVREMYKSLGTPVDAVAQAVREMKAVATGMMSGDDAAEAGAYFDYVIGAM
E
>Mature_160_residues
SIVTKSIVNADAEARYLSPGELDRIKAFVTSGESRLRIAETLTGSRERIIKSAGDALFQKRPDVVSPGGNAYGEEMTATC
LRDMDYYLRLITYGVVAGDVTPIEEIGLVGVREMYKSLGTPVDAVAQAVREMKAVATGMMSGDDAAEAGAYFDYVIGAME

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHAA_SYNP2 (B1XQM2)

Other databases:

- EMBL:   AF059339
- EMBL:   CP000951
- RefSeq:   YP_001735173.1
- ProteinModelPortal:   B1XQM2
- SMR:   B1XQM2
- GeneID:   6055786
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1930
- HOGENOM:   HBG635139
- OMA:   NAYGEEM
- ProtClustDB:   CLSK893027
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR009050
- InterPro:   IPR012128
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 17286; Mature: 17155

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: BINDING 81-81

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVTKSIVNADAEARYLSPGELDRIKAFVTSGESRLRIAETLTGSRERIIKSAGDALFQ
CCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
KRPDVVSPGGNAYGEEMTATCLRDMDYYLRLITYGVVAGDVTPIEEIGLVGVREMYKSLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
TPVDAVAQAVREMKAVATGMMSGDDAAEAGAYFDYVIGAME
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIVTKSIVNADAEARYLSPGELDRIKAFVTSGESRLRIAETLTGSRERIIKSAGDALFQ
CCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
KRPDVVSPGGNAYGEEMTATCLRDMDYYLRLITYGVVAGDVTPIEEIGLVGVREMYKSLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
TPVDAVAQAVREMKAVATGMMSGDDAAEAGAYFDYVIGAME
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA