Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 170078522

GI number: 170078522

Start: 2000388

End: 2001056

Strand: Direct

Name: yggS [C]

Synonym: SYNPCC7002_A1917

Alternate gene names: 170078522

Gene position: 2000388-2001056 (Clockwise)

Preceding gene: 170078521

Following gene: 170078523

Centisome position: 66.5

GC content: 49.33

Gene sequence:

>669_bases
ATGTCAGATGCGATCGCCGAAAATATTGCCCGACTACGGGAAGAAATCCCTCCGGAGGTGCGCCTGATCGCCGTTAGCAA
AACCCACTCTGCGGCAAAAATTCGTCTGGCCTATGCGGCGGGAATTCGAGATTTTGGCGAAAATCGGTTCCAGGAAGCCC
AGCAAAAACAAGCGGAATTAGAGGACTTACCAGATATTCGTTGGCATTTTATTGGCCATCTGCAAAAAAATAAGGCGAAA
AAGGCGATCACCCATTTCGATTGGATTCATACTGTAGATAGCCTGGCTCTCGCCCAAAAACTTGATCAATATGCCGCCGA
CTTAGAAAATCCAGCCCGCTGCTGTTTACAAATTAAACCCCTGCCTGACCCTAATAAATTTGGCTGGGAAATTCCCCAAC
TCCTGAGCGAGCTACCGCAACTCGCCACCTGTCAACACCTCAAGCTTCAGGGTTTAATGACAATTCTTCCCCTGGGGCTT
TCCCGCACTGAGACCCGGACGGCGTTTAAACAGATATTTTCTCTCAAGGAACAACTGAATCAGATGGCAAGCTTACCGGA
GCAATTAACAGAATTATCCATGGGAATGTCCGGTGATTATCCCCTGGCGATCGAGGCTGGAGCAACAATGATTCGCGTTG
GCCAGGGGATCTTCGGGGCACGGGAATAA

Upstream 100 bases:

>100_bases
TGCCATGGCTGAGTTTCAGGTATTACAGGCGCTCTATAAACGGACATTCCAATAAGCGAGTTAGTTGAGTCTAATTAATT
TACGGGTCATTTTTTTAGTA

Downstream 100 bases:

>100_bases
GCCAATCTAACCGCTGAAAAATTTGTTGATCACCCCAGTGAATGGCCGCAGTTCCATAAAGAATTTTGAAATTGATCCTC
TTGCAACAATTCTATTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSDAIAENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAELEDLPDIRWHFIGHLQKNKAK
KAITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGL
SRTETRTAFKQIFSLKEQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGARE

Sequences:

>Translated_222_residues
MSDAIAENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAELEDLPDIRWHFIGHLQKNKAK
KAITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGL
SRTETRTAFKQIFSLKEQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGARE
>Mature_221_residues
SDAIAENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAELEDLPDIRWHFIGHLQKNKAKK
AITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLS
RTETRTAFKQIFSLKEQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGARE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=35.3448275862069, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=37.0212765957447, Blast_Score=127, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17533025, Length=235, Percent_Identity=37.0212765957447, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=217, Percent_Identity=35.4838709677419, Blast_Score=114, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=38.4976525821596, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24910; Mature: 24779

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAIAENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAEL
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLPDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCC
LPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFKQIFSLKEQLN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGARE
HHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDAIAENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAEL
CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLPDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKP
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCC
LPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFKQIFSLKEQLN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGARE
HHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]