| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078502
Identifier: 170078502
GI number: 170078502
Start: 1981468
End: 1982262
Strand: Direct
Name: 170078502
Synonym: SYNPCC7002_A1897
Alternate gene names: NA
Gene position: 1981468-1982262 (Clockwise)
Preceding gene: 170078501
Following gene: 170078503
Centisome position: 65.87
GC content: 53.58
Gene sequence:
>795_bases ATGGTTAATTTTTCTGCTCCGAAAGCGGCTGGTTTGGCCCCTTGGTTTGATATTACGGCCCTGTTGTTGTGGGGAGCTTT GCTGCTCAAGTATGCGATTACGGGCCAGCTAGCTCTGTTGATCCACCCCAATTACTTCGGTTTATGTGTGGCGGCGGGGA TTATTCTCCTCCTGCTGGGGTTGGGAAAATTACTACAACAGGTGCGTCCCCAAGTTAGTGGCGGGGAGTCGGTGCAGCAC ATTACGCTATTACCCCAGAATGTGGGGAGTGCCCTATTAATTGTGGTGGCGATCGCCGGATTTTTGATCCCGCCGACCAT TTTGTCAAGCCAGACAGCGATTCAACGGGGTTTAACGGAAGAGTTGCCCCTCACCCGGAGTCAACCGGAAAGTTTTCGGG TCGGTACCTCCCCAGAGGAGCGGACGTTATTGGATTGGATTCGGACGTTGAATGTTTACCCGGAACCCGATGCCTATACG GGGGATCCGGTGAAGGTAAATGGGTTTGTGACTCACCTGCCCCAGTTGCCGGACAATTACATGATGGTGTCGCGGTTTGT GTTGACCTGTTGTGCAGTGGATGCCTATCCGGTGGGATTGCCCGTGAAACTCGAAGGCGATCGCCAAGCCTTTGCGCCGG ACTCCTGGGTAGAAGTCACGGGGGAAATGATCACCGAGGATCTCCAACTCACCACAGAAGCTGAGGGTGATAATAATTTG CCCCAGCGCCAGTTGGTGATCCAAGCCAGTGCCGTCGAACCGATTCCCACCCCCAGAAATCCTTACGATTATTAG
Upstream 100 bases:
>100_bases ATCAAGAACTGATGGCTGATGAAGAGGCAACACGTTTGTTTTAGGGTGGCCTTAACGGAAACGGGTGATAGTTGTTTGAG GTATTTTTTCCAGGAACGCA
Downstream 100 bases:
>100_bases GTATAAGGGTGGTGTCGCGCTCTTAAATCTTCGATGGTTAATCCCGCCGCTCGCCGCCCATTTTTCGCTTTTTGGGGTCT GTTGGCCGTTGGTCTGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MVNFSAPKAAGLAPWFDITALLLWGALLLKYAITGQLALLIHPNYFGLCVAAGIILLLLGLGKLLQQVRPQVSGGESVQH ITLLPQNVGSALLIVVAIAGFLIPPTILSSQTAIQRGLTEELPLTRSQPESFRVGTSPEERTLLDWIRTLNVYPEPDAYT GDPVKVNGFVTHLPQLPDNYMMVSRFVLTCCAVDAYPVGLPVKLEGDRQAFAPDSWVEVTGEMITEDLQLTTEAEGDNNL PQRQLVIQASAVEPIPTPRNPYDY
Sequences:
>Translated_264_residues MVNFSAPKAAGLAPWFDITALLLWGALLLKYAITGQLALLIHPNYFGLCVAAGIILLLLGLGKLLQQVRPQVSGGESVQH ITLLPQNVGSALLIVVAIAGFLIPPTILSSQTAIQRGLTEELPLTRSQPESFRVGTSPEERTLLDWIRTLNVYPEPDAYT GDPVKVNGFVTHLPQLPDNYMMVSRFVLTCCAVDAYPVGLPVKLEGDRQAFAPDSWVEVTGEMITEDLQLTTEAEGDNNL PQRQLVIQASAVEPIPTPRNPYDY >Mature_264_residues MVNFSAPKAAGLAPWFDITALLLWGALLLKYAITGQLALLIHPNYFGLCVAAGIILLLLGLGKLLQQVRPQVSGGESVQH ITLLPQNVGSALLIVVAIAGFLIPPTILSSQTAIQRGLTEELPLTRSQPESFRVGTSPEERTLLDWIRTLNVYPEPDAYT GDPVKVNGFVTHLPQLPDNYMMVSRFVLTCCAVDAYPVGLPVKLEGDRQAFAPDSWVEVTGEMITEDLQLTTEAEGDNNL PQRQLVIQASAVEPIPTPRNPYDY
Specific function: Unknown
COG id: COG3689
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28755; Mature: 28755
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNFSAPKAAGLAPWFDITALLLWGALLLKYAITGQLALLIHPNYFGLCVAAGIILLLLG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH LGKLLQQVRPQVSGGESVQHITLLPQNVGSALLIVVAIAGFLIPPTILSSQTAIQRGLTE HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH ELPLTRSQPESFRVGTSPEERTLLDWIRTLNVYPEPDAYTGDPVKVNGFVTHLPQLPDNY HCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHEEECCCCCCHH MMVSRFVLTCCAVDAYPVGLPVKLEGDRQAFAPDSWVEVTGEMITEDLQLTTEAEGDNNL HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC PQRQLVIQASAVEPIPTPRNPYDY CHHHEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MVNFSAPKAAGLAPWFDITALLLWGALLLKYAITGQLALLIHPNYFGLCVAAGIILLLLG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH LGKLLQQVRPQVSGGESVQHITLLPQNVGSALLIVVAIAGFLIPPTILSSQTAIQRGLTE HHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH ELPLTRSQPESFRVGTSPEERTLLDWIRTLNVYPEPDAYTGDPVKVNGFVTHLPQLPDNY HCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHEEECCCCCCHH MMVSRFVLTCCAVDAYPVGLPVKLEGDRQAFAPDSWVEVTGEMITEDLQLTTEAEGDNNL HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCC PQRQLVIQASAVEPIPTPRNPYDY CHHHEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA