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The map label for this gene is ybeY [C]

Identifier: 170078371

GI number: 170078371

Start: 1850771

End: 1851262

Strand: Reverse

Name: ybeY [C]

Synonym: SYNPCC7002_A1764

Alternate gene names: 170078371

Gene position: 1851262-1850771 (Counterclockwise)

Preceding gene: 170078372

Following gene: 170078370

Centisome position: 61.54

GC content: 52.44

Gene sequence:

>492_bases
ATGCAGCCCGTGCTTGAGTGTGAAATTTTTGTCGAAAATGCTTCTGGTCTAGAACTGCCTGAATTGGCGATCGCCCCTTG
GGAAAATCACCTTCAACGGTGGCTACCGGAATTAACAGCGGCTTTACCCCCGGCCGACGGTTACGAGTTAACCCTCCGCT
TCACCACTGACGCCGAAATCCACAATCTCAATCACCAATATCGCCACAAAGACCAACCCACCGACGTCCTTTCCTTTGCG
GCCCTCGAAGATAATTTTGCTAGCCCCTTACCCCCTGGGGAACCGCTCTATCTGGGAGACATTATTGTTTCGGTAGAAAC
GGCCCAACGCCAGGCCCAGGAACGGCAGCACAGCCTCCAAACGGAACTGGGTTGGTTGGTGAGCCATGGTTTATTGCACC
TGCTGGGGTGGGATCATCCCGATGAAGCCCGGTTAATTGAAATGCTCGATCGTCAAGCCGTACTCTTGCGAAACGTTCAA
CTTATTCCATAA

Upstream 100 bases:

>100_bases
GGTGCGCAAAGGGGGTAAGTCCCTCTGGCATTTTTTCCTCACCACCGCTGGCCTGTTGGGGTTTTTCGTCACCATGGCCT
ACCTCACCCGTTAGATGGGG

Downstream 100 bases:

>100_bases
TGGGGTGATTCTATTGAGGGAGAAGATGACACAGCACAAAAAAATCCTCTCACCCCCCGACCGGGAACGGCGATCGCTAG
CCTGGAAAGTGGCCCCTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MQPVLECEIFVENASGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAEIHNLNHQYRHKDQPTDVLSFA
ALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQTELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQ
LIP

Sequences:

>Translated_163_residues
MQPVLECEIFVENASGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAEIHNLNHQYRHKDQPTDVLSFA
ALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQTELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQ
LIP
>Mature_163_residues
MQPVLECEIFVENASGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAEIHNLNHQYRHKDQPTDVLSFA
ALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQTELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQ
LIP

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=140, Percent_Identity=37.1428571428571, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SYNP2 (B1XPN9)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735009.1
- ProteinModelPortal:   B1XPN9
- SMR:   B1XPN9
- GeneID:   6057812
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1764
- HOGENOM:   HBG734136
- OMA:   VELAWLA
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18518; Mature: 18518

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPVLECEIFVENASGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAEI
CCCCEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH
HNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQ
HCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHH
TELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQLIP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQPVLECEIFVENASGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAEI
CCCCEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHH
HNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQ
HCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHH
TELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQLIP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA