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The map label for this gene is psbB [H]

Identifier: 170078366

GI number: 170078366

Start: 1846363

End: 1847886

Strand: Reverse

Name: psbB [H]

Synonym: SYNPCC7002_A1759

Alternate gene names: 170078366

Gene position: 1847886-1846363 (Counterclockwise)

Preceding gene: 170078367

Following gene: 170078365

Centisome position: 61.43

GC content: 53.81

Gene sequence:

>1524_bases
ATGGGACTACCTTGGTACCGCGTACATACAGTCGTCCTTAACGACCCAGGTCGTCTGATTTCTGTACACCTCATGCACAC
TGCGCTTGTCGCAGGTTGGGCTGGCTCAATGGCCCTCTATGAGCTAGCAATTTTCGATCCCAGTGATCCCGTCCTCAATC
CCATGTGGCGGCAGGGCATGTTCGTACTGCCGTTCATGGCACGGCTGGGCGTAACTGGCTCCTGGAATGGCTGGGATATC
ACTGGTGCTGTAGGCACTAACCCCGGTTTTTGGTCCTTTGAAGGCGTCGCCGCAGCACACATCGTTCTGTCCGGTCTTCT
GTTCCTCGCTGCCGTTTGGCACTGGGTTTATTGGGATCTCGATCTTTTTGTTGACTCCCGTACCGGTAAGCCTGCCCTAG
ACTTGCCGAAAATGTTTGGGATTCACCTGTTCCTATCTGGTCTTCTTTGCTTCGGCTTTGGAGCCTTTCACCTCAGCGGC
GTCTGGGGGCCTGGAATGTGGGTTTCTGACCCCTATGGTGTAACGGGCCATGTCCAAGCCGTTGCCCCCGATTGGGGCCC
CAGTGGATTTAACCCCTTCAACCCTGGCGGCGTTGTGGCGCACCACATTGCCGCTGGTATCGTTGGGATTATTGCTGGTC
TTTTCCACCTCAGTGTGCGTCCCCCTGAGCGTCTGTATAAGGCACTCCGGATGGGTAACATTGAGACGGTTTTATCCAGC
AGTATTGCAGCGGTATTTTTTGCCGCATTCGTCGTCGCTGGCACCATGTGGTACGGCAACGCTACCACCCCCATCGAACT
TTTCGGCCCGACCCGTTATCAGTGGGACCAGGGTTATTTCCAAAACGAAATTCAGCGCCGTGTGGATGCTGAAATTGCGT
CAGGGGCAACACCTGCGGAAGCTTGGAATACAATTCCTGAAAAACTTGCTTTTTATGACTATGTCGGTAACAGCCCTGCG
AAAGGTGGTTTGTTCCGTACAGGGCCGATGGATCAAGGTGATGGAATTGCTCAGTCTTGGGCCGGCCACCCTGTCTTCAA
AGATGCAGAAGGTCGTGAGCTTTTTGTTCGTCGGATGCCCAACTTCTTTGAAACCTTCCCTGTGGTCATGACCGATGCGG
ATGGCGTCCTCCGGGCTGATATTCCGTTCCGTCGTTCTGAGTCTAAGTTCTCCGTTGAACAGGCTGGGGTTACGGTTTCC
TTCTTGGGTGGCGAACTCAATGGTCAAACCTTCACCGATGCTGCCACTGTCAGAAAATACGCCCGTCGTGCCCAGTTGGG
TGAGCCTTTCGAGTTTGATACTGAAACCCTTGGTTCTGACGGTGTATTCCGGACGAGCCCCCGTGGTTGGTTCACTTTTG
GTCACGCTGTATTTGCGCTGCTGTTCTTCTTTGGTCACATTTGGCATGGTTCTCGGACGTTGTACCGTGACGTATTTGCT
GGGGTTGACCCTGAACTGGCAGAAGAGCAAGTGGAATGGGGCTTCTTCCAGAAGGTTGGTGACAAGAGTACCCGTGCTAG
CTAA

Upstream 100 bases:

>100_bases
ATAGATTTGAAGTTGTTTTTCTCGGTTCAGACCAATCCTCGTTAATAATGAGAAAATATTTGGTCATAGTAGACACGATT
GTTTAGGAGGAGAGTAGTCA

Downstream 100 bases:

>100_bases
TTAAACACAGGTATCTATTGCATCGATCGGAAAGTTTTTTCCAATAATTCATTTTGAGGAGGTTGGGCCTTTAAGCCTAG
CCTCTTTTTTCTTGGGAAAA

Product: photosystem II protein

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWNGWDI
TGAVGTNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDLDLFVDSRTGKPALDLPKMFGIHLFLSGLLCFGFGAFHLSG
VWGPGMWVSDPYGVTGHVQAVAPDWGPSGFNPFNPGGVVAHHIAAGIVGIIAGLFHLSVRPPERLYKALRMGNIETVLSS
SIAAVFFAAFVVAGTMWYGNATTPIELFGPTRYQWDQGYFQNEIQRRVDAEIASGATPAEAWNTIPEKLAFYDYVGNSPA
KGGLFRTGPMDQGDGIAQSWAGHPVFKDAEGRELFVRRMPNFFETFPVVMTDADGVLRADIPFRRSESKFSVEQAGVTVS
FLGGELNGQTFTDAATVRKYARRAQLGEPFEFDTETLGSDGVFRTSPRGWFTFGHAVFALLFFFGHIWHGSRTLYRDVFA
GVDPELAEEQVEWGFFQKVGDKSTRAS

Sequences:

>Translated_507_residues
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWNGWDI
TGAVGTNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDLDLFVDSRTGKPALDLPKMFGIHLFLSGLLCFGFGAFHLSG
VWGPGMWVSDPYGVTGHVQAVAPDWGPSGFNPFNPGGVVAHHIAAGIVGIIAGLFHLSVRPPERLYKALRMGNIETVLSS
SIAAVFFAAFVVAGTMWYGNATTPIELFGPTRYQWDQGYFQNEIQRRVDAEIASGATPAEAWNTIPEKLAFYDYVGNSPA
KGGLFRTGPMDQGDGIAQSWAGHPVFKDAEGRELFVRRMPNFFETFPVVMTDADGVLRADIPFRRSESKFSVEQAGVTVS
FLGGELNGQTFTDAATVRKYARRAQLGEPFEFDTETLGSDGVFRTSPRGWFTFGHAVFALLFFFGHIWHGSRTLYRDVFA
GVDPELAEEQVEWGFFQKVGDKSTRAS
>Mature_506_residues
GLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWNGWDIT
GAVGTNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDLDLFVDSRTGKPALDLPKMFGIHLFLSGLLCFGFGAFHLSGV
WGPGMWVSDPYGVTGHVQAVAPDWGPSGFNPFNPGGVVAHHIAAGIVGIIAGLFHLSVRPPERLYKALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGNATTPIELFGPTRYQWDQGYFQNEIQRRVDAEIASGATPAEAWNTIPEKLAFYDYVGNSPAK
GGLFRTGPMDQGDGIAQSWAGHPVFKDAEGRELFVRRMPNFFETFPVVMTDADGVLRADIPFRRSESKFSVEQAGVTVSF
LGGELNGQTFTDAATVRKYARRAQLGEPFEFDTETLGSDGVFRTSPRGWFTFGHAVFALLFFFGHIWHGSRTLYRDVFAG
VDPELAEEQVEWGFFQKVGDKSTRAS

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 55800; Mature: 55669

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHCCE
FVLPFMARLGVTGSWNGWDITGAVGTNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDL
EHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
DLFVDSRTGKPALDLPKMFGIHLFLSGLLCFGFGAFHLSGVWGPGMWVSDPYGVTGHVQA
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
VAPDWGPSGFNPFNPGGVVAHHIAAGIVGIIAGLFHLSVRPPERLYKALRMGNIETVLSS
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
SIAAVFFAAFVVAGTMWYGNATTPIELFGPTRYQWDQGYFQNEIQRRVDAEIASGATPAE
HHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AWNTIPEKLAFYDYVGNSPAKGGLFRTGPMDQGDGIAQSWAGHPVFKDAEGRELFVRRMP
HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCC
NFFETFPVVMTDADGVLRADIPFRRSESKFSVEQAGVTVSFLGGELNGQTFTDAATVRKY
HHHHHCCEEEECCCCEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEHHHHHHHHH
ARRAQLGEPFEFDTETLGSDGVFRTSPRGWFTFGHAVFALLFFFGHIWHGSRTLYRDVFA
HHHHCCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GVDPELAEEQVEWGFFQKVGDKSTRAS
CCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHCCE
FVLPFMARLGVTGSWNGWDITGAVGTNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDL
EHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
DLFVDSRTGKPALDLPKMFGIHLFLSGLLCFGFGAFHLSGVWGPGMWVSDPYGVTGHVQA
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
VAPDWGPSGFNPFNPGGVVAHHIAAGIVGIIAGLFHLSVRPPERLYKALRMGNIETVLSS
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
SIAAVFFAAFVVAGTMWYGNATTPIELFGPTRYQWDQGYFQNEIQRRVDAEIASGATPAE
HHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AWNTIPEKLAFYDYVGNSPAKGGLFRTGPMDQGDGIAQSWAGHPVFKDAEGRELFVRRMP
HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCC
NFFETFPVVMTDADGVLRADIPFRRSESKFSVEQAGVTVSFLGGELNGQTFTDAATVRKY
HHHHHCCEEEECCCCEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEHHHHHHHHH
ARRAQLGEPFEFDTETLGSDGVFRTSPRGWFTFGHAVFALLFFFGHIWHGSRTLYRDVFA
HHHHCCCCCCCCCHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
GVDPELAEEQVEWGFFQKVGDKSTRAS
CCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]