| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078346
Identifier: 170078346
GI number: 170078346
Start: 1826547
End: 1827803
Strand: Direct
Name: 170078346
Synonym: SYNPCC7002_A1739
Alternate gene names: NA
Gene position: 1826547-1827803 (Clockwise)
Preceding gene: 170078343
Following gene: 170078348
Centisome position: 60.72
GC content: 51.55
Gene sequence:
>1257_bases ATGAATTTAGATGTGATTGTCGAGTTGGCGATCGCCTTAGCCTTGGGGGTGATTATTGGCCTAGAACGGGGCTGGCGCAA CCGGGCCGACGATGAGGGTTACGGCGATAGCGGCCTCCGCAATTTTTCAATTTGTGGCTTACTAGGGGGAATTGCCGCTT TACTGGCGCAAAGTTGGGGATTTGGTATTCTTGTCGGCATTTTCCTCGGTTTAGCGGGTTTGGTGGCCACCTCCTACGTT TTAACCGCGAAAAAATCCGGTGATTATGGCAGCACGACAGAATTGGCCTTAATGATCACCTTTTGTCTGGGAGCCTTGGC CTTGAGTGGCTTTACCCAAGAGGCGATCGCCGTGGCGGTGGTGGTGGCCTGGATCCTAGGGGCAAAACCGGAACTCACAA AAACCCTCAATTGGCTCCAGCGCCAGGAATTAATTGCAACTCTCCAACTACTGCTGATTGCGGTGGTCGTGTTACCCCTT CTGCCCAACCAAGCCATGGGGCCATGGAATGCTCTTAATCCACGGGCGATCGGTTGGCTAGTGTTGTTAATTGCAGGCAT TTCCTACATTGGTTACTTTGCGATTCGCATTTTAGGTAGTCAAGTCGGGCTGATGTTAACGGGCTTTTTTGGGGGGATTG CTTCCTCCACTGCCTTGACGGTTTCCTTTTCTCGCATGGCCAAACAACAACCCAGCGAAACCATTTCCCTTGCGGCTGGC ATTGTCCTTGCCAATGGCATTATGGCCCCTCGTTTGTTGTTGGTGATTGCTGTAGTCAGTCAAACTCTGGCCTACAAGTT GGCGGCTCCTTTATTAATTTTGGGTTTGATTCCTGTGATTGCCGCAGTGGCGATCGCCCGTTGGAAAACCCAACCCCAGG ACAGACCCGCCGCCGAAGTGAGCGTGAATAATCCCGTTGAACTCGGTTCCGCAATTCAATACACCGCTCTCCTGGTGGTT TTATCCCTGTTGGTGCGGTGGGCCCAGGAAGAATTTGGTGAACAGGGGATTTATCTCCTCTCTGCCCTGTCTGGCTTTGC CGATGTCGATGCCGTGAGTTTATCCCTCGCCAACGCGGTACAAGACGACCTTCCCGAAAAAGTTGCCATGTATGGTATTT GGTTAGCCGTAACAGCCAACACCCTTGTCAAAGTCGGCTTTACTCGGACGATTGGGAATCCCAAACTCGCCTATTGGTGC GGCAGCATTATGTTGAGTGGTTTAATTGCCGGTTTTTTGGTATTGTTAGCAGTCTGA
Upstream 100 bases:
>100_bases CGAGCTATGCTAACCGAAATTGGCGGCTGTTTCAGGCGTTTTTTAAATTTTTGTGACCCCTAAATGTGGGTAAGCTAAGG TTGAAAATTTGAGGAATGCG
Downstream 100 bases:
>100_bases GTGAAATATTTTTTCCCATCAAGATTCACGAGCCTTTTGAATACCCCCTTTGGAGGTGGTGTACGGGACTTTAACTAAAG AATCAGCTTTATTGGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MNLDVIVELAIALALGVIIGLERGWRNRADDEGYGDSGLRNFSICGLLGGIAALLAQSWGFGILVGIFLGLAGLVATSYV LTAKKSGDYGSTTELALMITFCLGALALSGFTQEAIAVAVVVAWILGAKPELTKTLNWLQRQELIATLQLLLIAVVVLPL LPNQAMGPWNALNPRAIGWLVLLIAGISYIGYFAIRILGSQVGLMLTGFFGGIASSTALTVSFSRMAKQQPSETISLAAG IVLANGIMAPRLLLVIAVVSQTLAYKLAAPLLILGLIPVIAAVAIARWKTQPQDRPAAEVSVNNPVELGSAIQYTALLVV LSLLVRWAQEEFGEQGIYLLSALSGFADVDAVSLSLANAVQDDLPEKVAMYGIWLAVTANTLVKVGFTRTIGNPKLAYWC GSIMLSGLIAGFLVLLAV
Sequences:
>Translated_418_residues MNLDVIVELAIALALGVIIGLERGWRNRADDEGYGDSGLRNFSICGLLGGIAALLAQSWGFGILVGIFLGLAGLVATSYV LTAKKSGDYGSTTELALMITFCLGALALSGFTQEAIAVAVVVAWILGAKPELTKTLNWLQRQELIATLQLLLIAVVVLPL LPNQAMGPWNALNPRAIGWLVLLIAGISYIGYFAIRILGSQVGLMLTGFFGGIASSTALTVSFSRMAKQQPSETISLAAG IVLANGIMAPRLLLVIAVVSQTLAYKLAAPLLILGLIPVIAAVAIARWKTQPQDRPAAEVSVNNPVELGSAIQYTALLVV LSLLVRWAQEEFGEQGIYLLSALSGFADVDAVSLSLANAVQDDLPEKVAMYGIWLAVTANTLVKVGFTRTIGNPKLAYWC GSIMLSGLIAGFLVLLAV >Mature_418_residues MNLDVIVELAIALALGVIIGLERGWRNRADDEGYGDSGLRNFSICGLLGGIAALLAQSWGFGILVGIFLGLAGLVATSYV LTAKKSGDYGSTTELALMITFCLGALALSGFTQEAIAVAVVVAWILGAKPELTKTLNWLQRQELIATLQLLLIAVVVLPL LPNQAMGPWNALNPRAIGWLVLLIAGISYIGYFAIRILGSQVGLMLTGFFGGIASSTALTVSFSRMAKQQPSETISLAAG IVLANGIMAPRLLLVIAVVSQTLAYKLAAPLLILGLIPVIAAVAIARWKTQPQDRPAAEVSVNNPVELGSAIQYTALLVV LSLLVRWAQEEFGEQGIYLLSALSGFADVDAVSLSLANAVQDDLPEKVAMYGIWLAVTANTLVKVGFTRTIGNPKLAYWC GSIMLSGLIAGFLVLLAV
Specific function: Unknown
COG id: COG3174
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To P.aeruginosa PA0043 and M.thermoautotrophicum MTH1451 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44017; Mature: 44017
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLDVIVELAIALALGVIIGLERGWRNRADDEGYGDSGLRNFSICGLLGGIAALLAQSWG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC FGILVGIFLGLAGLVATSYVLTAKKSGDYGSTTELALMITFCLGALALSGFTQEAIAVAV HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VVAWILGAKPELTKTLNWLQRQELIATLQLLLIAVVVLPLLPNQAMGPWNALNPRAIGWL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH VLLIAGISYIGYFAIRILGSQVGLMLTGFFGGIASSTALTVSFSRMAKQQPSETISLAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH IVLANGIMAPRLLLVIAVVSQTLAYKLAAPLLILGLIPVIAAVAIARWKTQPQDRPAAEV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE SVNNPVELGSAIQYTALLVVLSLLVRWAQEEFGEQGIYLLSALSGFADVDAVSLSLANAV ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHH QDDLPEKVAMYGIWLAVTANTLVKVGFTRTIGNPKLAYWCGSIMLSGLIAGFLVLLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNLDVIVELAIALALGVIIGLERGWRNRADDEGYGDSGLRNFSICGLLGGIAALLAQSWG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC FGILVGIFLGLAGLVATSYVLTAKKSGDYGSTTELALMITFCLGALALSGFTQEAIAVAV HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VVAWILGAKPELTKTLNWLQRQELIATLQLLLIAVVVLPLLPNQAMGPWNALNPRAIGWL HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH VLLIAGISYIGYFAIRILGSQVGLMLTGFFGGIASSTALTVSFSRMAKQQPSETISLAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH IVLANGIMAPRLLLVIAVVSQTLAYKLAAPLLILGLIPVIAAVAIARWKTQPQDRPAAEV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE SVNNPVELGSAIQYTALLVVLSLLVRWAQEEFGEQGIYLLSALSGFADVDAVSLSLANAV ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHH QDDLPEKVAMYGIWLAVTANTLVKVGFTRTIGNPKLAYWCGSIMLSGLIAGFLVLLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]